View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16587_low_1 (Length: 633)
Name: NF16587_low_1
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_1 |
 | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 110 - 589
Target Start/End: Original strand, 28152218 - 28152697
Alignment:
| Q |
110 |
tatgactaataggaactgcatgaagttggagacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcacgagacaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28152218 |
tatgactaataggaactgcatgaagttggagacatcatgttttgtttgaccggaactttgaggattccagagtcgtttaagcaccagagcacgagacaaa |
28152317 |
T |
|
| Q |
210 |
caatttctttctggtttcattacaagctcccttccattgctctcttctgttctactggccataaatataacacaaactttacatctattttctccatttt |
309 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28152318 |
caatttctttctggtttcataacaagctcccttccattgctctcttctgtactactggccataaatataacacaaacttttcatctattttctccatttt |
28152417 |
T |
|
| Q |
310 |
caaaatattcctcaatagcatagaatacgctcttgactgtccatctcatcctccttatttcactatagaacccgatcatacatatctattttgtttgcca |
409 |
Q |
| |
|
||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152418 |
taaaatattcctcaatggcattgaatgcgctcttgactgtccatctcatcctccttatttcactatagaacccgatcatacatatctattttgtttgcca |
28152517 |
T |
|
| Q |
410 |
ctacaagacatggtaagaatggatgaagtacttttaaaaagtgcatggaaccatgcggtggttaggtatgatttttcgatcatgccatttgaccttaagg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152518 |
ctacaagacatggtaagaatggatgaagtacttttaaaaagtgaatggaaccatgcggtggttaggtatgatttttcgatcatgccatttgaccttaagg |
28152617 |
T |
|
| Q |
510 |
aaagtcgaatgcacatattcaaacaagaaagcagcatggaggatattcagttcaccaatccttataaaaagaaagaatta |
589 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28152618 |
aaagtcgaatgcatatattcaaacaagaaagcagcatggaggatattcagttcaccaatccttataaaaagcaagaatta |
28152697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 589
Target Start/End: Complemental strand, 28095684 - 28095102
Alignment:
| Q |
7 |
agttcctcatgtagaaacatgctactgaatcaggttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaacttacaagtt |
106 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| ||||||| ||||| | || || |||| || | |||||||| ||| |||||| ||||||| |
|
|
| T |
28095684 |
agttcctcatgtagaagcatgctactggatcaggttttgcattttcttttatttgagttcatatttcttaacttactttatctttctaaactcacaagtt |
28095585 |
T |
|
| Q |
107 |
ctttatgactaataggaactgcatgaagttggagacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcacgagac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||||||| ||||||||| || |||| ||||||||||||| ||| |
|
|
| T |
28095584 |
atttatgactaataggaactgcatgaagttggagacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacgac |
28095485 |
T |
|
| Q |
207 |
aaacaatttctttctggtttcattacaagctcccttccattgctctcttctgttctactggccataaatataacacaaactttacatctattttctccat |
306 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||| || | ||| ||||||||||||||||| | |
|
|
| T |
28095484 |
agccaatttctttctggtttcataacaagctcccttccatttctctcttctgtactattggatgtaaataccacccgaacgttacatctattttctcctt |
28095385 |
T |
|
| Q |
307 |
tttcaaaatattcctcaatagcatagaatacgctcttgactgtccatctcatcctccttatttcactatagaacccgatcatacatatctattttgtttg |
406 |
Q |
| |
|
|||||||||| | ||||| || |||| | || ||| ||||| || || ||||||| | | || ||| || |||||||||||||| || ||||| |
|
|
| T |
28095384 |
tttcaaaataaccatcaatggctatgaatgctttcgtgaaggtccaactaattttccttatattaaaattgaagccaatcatacatatctagttggtttg |
28095285 |
T |
|
| Q |
407 |
ccactacaagacatggtaagaatggatgaagtacttttaaaaagtgcatggaaccatgcggtggttaggtatgatttttcgatcatgccatttgacctta |
506 |
Q |
| |
|
||||| |||| ||| ||| ||| ||||| | |||||||||| | |||||||||||||||||||| | |||| |||| | ||||||||||||||| |
|
|
| T |
28095284 |
aaactactagacctggacagattgggtgaagcatttttaaaaagggaatggaaccatgcggtggttacatgtgatatttcaactgtgccatttgacctta |
28095185 |
T |
|
| Q |
507 |
aggaaagtcgaatgcacatattcaaacaagaaagcagcatggaggatattcagttcaccaatccttataaaaagaaagaatta |
589 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
28095184 |
aggaaagtcgaatgcacatatttaaacaagaaagtagaatggaggatattcagttcaccaatcattataaaaagagagaatta |
28095102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 28151947 - 28152060
Alignment:
| Q |
1 |
tcatcaagttcctcatgtagaaacatgctactgaatcaggttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaactta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151947 |
tcatcaagttcctcatgtagaaacatgctactgaatcaggttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaactta |
28152046 |
T |
|
| Q |
101 |
caagttctttatga |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28152047 |
caagttctttatga |
28152060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 581
Target Start/End: Complemental strand, 26340293 - 26340166
Alignment:
| Q |
454 |
atggaaccatgcggtggttaggtatgatttttcgatcatgccatttgacctt-aaggaaagtcgaatgcacatattcaaacaagaaagcagcatggagga |
552 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||| || || ||||||| ||||||||||||||||||||| ||| | ||||| ||| | |
|
|
| T |
26340293 |
atggaaccatgcggaggttacataagatttttcgatcatgccatttcacttttaaggaaactcgaatgcacatattcaaacaggaatgtagcatagagaa |
26340194 |
T |
|
| Q |
553 |
tattcagttcaccaatccttataaaaaga |
581 |
Q |
| |
|
|||||| |||||||||||| |||||||| |
|
|
| T |
26340193 |
tattca-atcaccaatccttttaaaaaga |
26340166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 26340726 - 26340469
Alignment:
| Q |
7 |
agttcctcatgtagaaacatgctactgaatcaggttttgttttttcttgtatttaacttaatctttcatagcatactttatatttgtaaacttacaagtt |
106 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||||| |||||||| ||||| ||||| || ||||||||| ||||||| ||| ||||||| |||||| |
|
|
| T |
26340726 |
agttcgtcatgtagaaacaagctacataatcaggtttatttttttctcgtatt-aacttcatatttcatagcgcactttatctttctaaacttgcaagtt |
26340628 |
T |
|
| Q |
107 |
ctttatgactaataggaactgcatgaagttggagacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcacgagac |
206 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||||| | || ||| ||||| | |||| | ||||||||||||| |||| || |||| |||| | || |
|
|
| T |
26340627 |
attcatgactaacaggaactgcatgatgttggaggccctatattttgtttgccaaaaactgcaaggattccagagtggtttgagaaccagagcaggggat |
26340528 |
T |
|
| Q |
207 |
aaacaatttctttctggtttcattacaagctcccttccattgctctcttctgttctact |
265 |
Q |
| |
|
| |||||||| |||||| ||||||| ||||||| ||| ||||||| ||| ||||| |
|
|
| T |
26340527 |
cctcgatttctttagggtttctttacaagatcccttcaattcctctcttttgtactact |
26340469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 28525221 - 28525367
Alignment:
| Q |
108 |
tttatgactaataggaactgcatgaagttggagacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcacgagaca |
207 |
Q |
| |
|
|||||| |||| ||||||||||||| | ||||| | || |||| ||||| | ||| | | ||||||||||||| |||| | ||||||| || | |||| |
|
|
| T |
28525221 |
tttatggctaacaggaactgcatgaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatgggaca |
28525320 |
T |
|
| Q |
208 |
aacaatttctttctggtttcattacaagctcccttccattgctctct |
254 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||||||||||||||||| |
|
|
| T |
28525321 |
tacaatttctttttggtttcgtaacaacctcccttccattgctctct |
28525367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 28246413 - 28246497
Alignment:
| Q |
170 |
aggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttcattacaagctcccttccattgctctct |
254 |
Q |
| |
|
||||||||||| | |||| | |||||||||| | |||| ||||||||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
28246413 |
aggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
28246497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 28239373 - 28239519
Alignment:
| Q |
108 |
tttatgactaataggaactgcatgaagttggagacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcacgagaca |
207 |
Q |
| |
|
|||||| |||| ||||||||||||| | ||||| | ||| ||| |||| || ||| | |||||||||||||| |||| | || |||| || | |||| |
|
|
| T |
28239373 |
tttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggaca |
28239472 |
T |
|
| Q |
208 |
aacaatttctttctggtttcattacaagctcccttccattgctctct |
254 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
28239473 |
tacaatttctttttggtttcgtaacaagctcccttccatggctctct |
28239519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 28142683 - 28142770
Alignment:
| Q |
170 |
aggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttcattacaagctcccttccattgctctcttct |
257 |
Q |
| |
|
||||||||||||| |||| |||||||||||| | ||| | ||||| |||||||||||| | | ||| |||||||||| ||| |||||| |
|
|
| T |
28142683 |
aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttct |
28142770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 2170704 - 2170618
Alignment:
| Q |
170 |
aggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttcattacaagctcccttccattgctctcttc |
256 |
Q |
| |
|
||||||||||||| |||| | || ||||||| | ||| | |||||||||||||||||| | ||| | |||||||||| ||||||||| |
|
|
| T |
2170704 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttc |
2170618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 28191295 - 28191335
Alignment:
| Q |
9 |
ttcctcatgtagaaacatgctactgaatcaggttttgtttt |
49 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
28191295 |
ttcctcgtgtagaaacatgctattgaatcaggttttgtttt |
28191335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 26876614 - 26876650
Alignment:
| Q |
191 |
caccaaagcacgagacaaacaatttctttctggtttc |
227 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
26876614 |
caccaaatcacgggacaaacaatttctttctggtttc |
26876650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 26887826 - 26887882
Alignment:
| Q |
171 |
ggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttc |
227 |
Q |
| |
|
|||||||||| | |||| |||||||||||| | |||| ||| ||||||||||||||| |
|
|
| T |
26887826 |
ggattccagattggtttgagcaccaaagcaggggacacacactttctttctggtttc |
26887882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 46575 - 46659
Alignment:
| Q |
170 |
aggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttcattacaagctcccttccattgctctct |
254 |
Q |
| |
|
||||||||||| | |||| | |||||||||| | |||| ||||||||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
46575 |
aggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
46659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 39535 - 39681
Alignment:
| Q |
108 |
tttatgactaataggaactgcatgaagttggagacatcatgtttcgtttgtccggaacttcgaggattccagagtcgtttaagcaccaaagcacgagaca |
207 |
Q |
| |
|
|||||| |||| ||||||||||||| | ||||| | ||| ||| |||| || ||| | |||||||||||||| |||| | || |||| || | |||| |
|
|
| T |
39535 |
tttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggaca |
39634 |
T |
|
| Q |
208 |
aacaatttctttctggtttcattacaagctcccttccattgctctct |
254 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
39635 |
tacaatttctttttggtttcgtaacaagctcccttccatggctctct |
39681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 55355 - 55260
Alignment:
| Q |
170 |
aggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttcattacaagctcccttccattgctctcttctgttctact |
265 |
Q |
| |
|
||||||||||||| |||| ||||||||| || | |||| || |||||||| ||||||| | ||||||||||||||| |||||||| | ||||||| |
|
|
| T |
55355 |
aggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctttttttctact |
55260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 12557 - 12643
Alignment:
| Q |
170 |
aggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttcattacaagctcccttccattgctctcttc |
256 |
Q |
| |
|
||||||||||||| |||| | || ||||||| | ||| | |||||||||||||||||| | ||| | |||||||||| ||||||||| |
|
|
| T |
12557 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttc |
12643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 16694055 - 16694095
Alignment:
| Q |
9 |
ttcctcatgtagaaacatgctactgaatcaggttttgtttt |
49 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
16694055 |
ttcctcatgcagaagcatgctactgaatcaggttttctttt |
16694095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 3282555 - 3282598
Alignment:
| Q |
16 |
tgtagaaacatgctactgaatcaggttttgttttttcttgtattt |
60 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||||||||||| |
|
|
| T |
3282555 |
tgtagaagcatgctactgaatcaggttttg-tgtttcttgtattt |
3282598 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 17990262 - 17990206
Alignment:
| Q |
171 |
ggattccagagtcgtttaagcaccaaagcacgagacaaacaatttctttctggtttc |
227 |
Q |
| |
|
|||||||||| | |||| |||||||||||| | | || ||||||||||||||||||| |
|
|
| T |
17990262 |
ggattccagattggtttgagcaccaaagcagggggcacacaatttctttctggtttc |
17990206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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