View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_11 (Length: 358)
Name: NF16587_low_11
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 34758133 - 34758463
Alignment:
| Q |
16 |
caatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34758133 |
caatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaa |
34758232 |
T |
|
| Q |
116 |
tctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34758233 |
tctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttc |
34758332 |
T |
|
| Q |
216 |
aaaagcgaaagaaaatcactgtaatcagcaaaagcaccttgacccattagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagttta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34758333 |
aaaagcgaaagaaaatcactgtaatcagcaaaagcaccttgacccattagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagttta |
34758432 |
T |
|
| Q |
316 |
catttttatgttgatggggggtttgatgatg |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
34758433 |
catttttatgttgatggggggtttgatgatg |
34758463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 34615585 - 34615915
Alignment:
| Q |
16 |
caatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaa |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34615585 |
caatcatcaaattcaacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaa |
34615684 |
T |
|
| Q |
116 |
tctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34615685 |
tctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttc |
34615784 |
T |
|
| Q |
216 |
aaaagcgaaagaaaatcactgtaatcagcaaaagcaccttgacccattagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagttta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34615785 |
aaaagcgaaagaaaatcactgtaatcagcaaaagcaccttgacccattagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagttta |
34615884 |
T |
|
| Q |
316 |
catttttatgttgatggggggtttgatgatg |
346 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
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|
| T |
34615885 |
catttttatgttgatggggggcttgatgatg |
34615915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 34743022 - 34743352
Alignment:
| Q |
16 |
caatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaa |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34743022 |
caatcatcaaattcaacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaa |
34743121 |
T |
|
| Q |
116 |
tctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34743122 |
tctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttc |
34743221 |
T |
|
| Q |
216 |
aaaagcgaaagaaaatcactgtaatcagcaaaagcaccttgacccattagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagttta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34743222 |
aaaagcgaaagaaaatcactgtaatcagcaaaagcaccttgacccattagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagttta |
34743321 |
T |
|
| Q |
316 |
catttttatgttgatggggggtttgatgatg |
346 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
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|
| T |
34743322 |
catttttatgttgatggggggcttgatgatg |
34743352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 11544418 - 11544747
Alignment:
| Q |
17 |
aatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaat |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11544418 |
aatcatcaaattcaacgaaccgacatttctatcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcacgtacaacccaatcaat |
11544517 |
T |
|
| Q |
117 |
ctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11544518 |
ctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaacccttttccctaattcaagcgacttcaaatcctcacataatttca |
11544617 |
T |
|
| Q |
217 |
aaagcgaaagaaaatcactgtaatcagcaaaagcaccttgacccattagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagtttac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11544618 |
aaagcgaaagaaaatcactgtaatcagcaaaatcagtttgacccaatagttctaaaacttgatttacgttaccctcttgaagaaaatgcgcaaagtttac |
11544717 |
T |
|
| Q |
317 |
atttttatgttgatggggggtttgatgatg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11544718 |
atttttatgttgatggggggtttgatgatg |
11544747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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