View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_13 (Length: 326)
Name: NF16587_low_13
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 6057698 - 6057392
Alignment:
| Q |
1 |
attcttcttccaaagttagaatatttccgactagaaaactgtccagaaattgaatcatttcccgaaagtggtatgccacctaagttgagatcgattcgca |
100 |
Q |
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| T |
6057698 |
attcttcttccaaagttagaatatttccgactagaaaactgtccagaaattgaatcattccccgaaagtggtatgccacctaagttgagatcgattcgca |
6057599 |
T |
|
| Q |
101 |
tcatgaattgcgagaaactacttactggcctgtcctggccttccatggacatgcttactgatgtaacaattcaaggtccatgtgatgggatcaagtcttt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6057598 |
tcatgaattgcgagaaactacttactggtctgtcctggccttccatggacatgcttactgatgtaacaattcaaggtccatgtgatgggatcaaatcttt |
6057499 |
T |
|
| Q |
201 |
cccaaaggaaggtttgttacatgcttcccttaagtctctaacactacttacattttctagtttggagatgttggattgtaagggccttatccatctcacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6057498 |
cccaaaggaaggtttgttacatgcttcccttaagtctctaacactacttacattttctagtttggaaatgttggattgtaagggccttatccatctcacc |
6057399 |
T |
|
| Q |
301 |
tccctcc |
307 |
Q |
| |
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||||||| |
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| T |
6057398 |
tccctcc |
6057392 |
T |
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