View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16587_low_19 (Length: 256)
Name: NF16587_low_19
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_19 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 48543944 - 48543697
Alignment:
| Q |
9 |
agcacagatattactctcctggagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtga |
108 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48543944 |
agcacacatattactctccctgagagtgtgacatagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcattttcatagtggtga |
48543845 |
T |
|
| Q |
109 |
gtggaaacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcccat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
48543844 |
gtggaaacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttccgagaccttcatcccaacaaatttgaatcccat |
48543745 |
T |
|
| Q |
209 |
gcattaatgtcaagatttcggcatgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48543744 |
gcattaatgtcaagatttcggcatgaagaatatttgaatagccaatat |
48543697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 52666163 - 52666389
Alignment:
| Q |
30 |
gagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtgagtggaaacctcagcatactgc |
129 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||| ||||| ||||||| ||| ||||||| |||||||| |||||||||| ||||||| |||| |
|
|
| T |
52666163 |
gagagtgtgacataattgaaaagtccaattcttaaccatgtgctttataataataactaactcattttcatagtggcgagtggaaacatcagcatgctgc |
52666262 |
T |
|
| Q |
130 |
actaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcccatgcattaatgtcaagatttcgg |
229 |
Q |
| |
|
|||| |||||||||||||| | ||| ||||||||||||||||| ||| || |||| |||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
52666263 |
actatgtgaatagtatgcatggaatgagtgtaacaaataatgtctcttagacctttctcccaacaaatttgaatcgcatgcattaatgccaagatttcgg |
52666362 |
T |
|
| Q |
230 |
catgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
52666363 |
catgaatggtatttgagtagccaatat |
52666389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 45826001 - 45825952
Alignment:
| Q |
78 |
aataatagctatctcatttccatagtggtgagtggaaacctcagcatact |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
45826001 |
aataatagctatctcatttctatagtggtgaactgaaacatcagcatact |
45825952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 30381601 - 30381534
Alignment:
| Q |
189 |
ccaacaaatttgaatcccatgcattaatgtca-agatttcggcatgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
||||| ||||| |||| ||||||||||| ||| |||||||||||||||||||| | |||||| |||||| |
|
|
| T |
30381601 |
ccaacgaatttaaatctcatgcattaat-tcagagatttcggcatgaagaatactcgagtagtcaatat |
30381534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 1808309 - 1808063
Alignment:
| Q |
9 |
agcacagatattactctcctggagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtga |
108 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| |||||||||||| |||| |||| ||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1808309 |
agcacacatattaccctctctgagagtgtgacatagttgaaaagttcaatctttagccatg-actttctaataatagctatctcatttccataatggtga |
1808211 |
T |
|
| Q |
109 |
gtggaaacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcccat |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
1808210 |
gtggaaacatcagcatactgcactaggtgaatagtatgcatgaaatcagtgtagcaaataatgtctctcagaccttcatcccaacaaatttgaatcccat |
1808111 |
T |
|
| Q |
209 |
gcattaatgtcaagatttcggcatgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1808110 |
acattattgccaagatttcggcatgaagaatatttgagtagtcaatat |
1808063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 7861916 - 7862123
Alignment:
| Q |
11 |
cacagatattactctcctggagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtgagt |
110 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| ||||||||||| | ||||| |||| |
|
|
| T |
7861916 |
cacatatattaccctccttgagagtgtgacatagttgaaaagtccaatctttagtcatgtactttctaataatagttatctcatttctacagtggcgagt |
7862015 |
T |
|
| Q |
111 |
ggaaacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcccatgc |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| | |||| |||||| ||||||| | ||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
7862016 |
ggaaacatcagcatactgcactaggtgaatagtatgcatggaatctgtgtaataaataatatctctaaggccttcattccaacaaatttgaatctcatgc |
7862115 |
T |
|
| Q |
211 |
attaatgt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
7862116 |
attaatgt |
7862123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 14624026 - 14624271
Alignment:
| Q |
11 |
cacagatattactctcctggagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtgagt |
110 |
Q |
| |
|
|||| ||||||| |||| |||| |||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
14624026 |
cacacatattaccctccctgagaatgtgacatagttgaaaagtccaatcgttagtcatgtactttctaataatagctatctcatttccatagttgtgagt |
14624125 |
T |
|
| Q |
111 |
ggaaacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcccatgc |
210 |
Q |
| |
|
| |||| ||| |||||| ||||| ||||||| |||||| | ||| ||||||||||||||| | ||| || ||||| ||||| |||||||||| ||||||| |
|
|
| T |
14624126 |
gaaaacatcaacatactccactatgtgaataatatgcatggaattagtgtaacaaataatatctctcagaccttcgtcccatcaaatttgaaccccatgc |
14624225 |
T |
|
| Q |
211 |
attaatgtcaagatttcggcatgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
14624226 |
attaatgccaagagttcggcatgaataatatttgagtatccaatat |
14624271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 8194654 - 8194879
Alignment:
| Q |
31 |
agagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtgagtggaaacctcagcatactgca |
130 |
Q |
| |
|
|||||||||| ||| | ||||||||||| ||| ||||||||||| ||||||||||||||||| ||||| ||||||||| |||| || |||| || | |
|
|
| T |
8194654 |
agagtgtgacatagattaaaagtccaatcttttgccatgtactttctgataatagctatctcattaccataatggtgagtgaaaacatctgcatgttgga |
8194753 |
T |
|
| Q |
131 |
ctaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcccatgcattaatgtcaagatttcggc |
230 |
Q |
| |
|
| || || |||||||||| | ||||||||||||||||||||| | | || ||||| |||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
8194754 |
cgagatggatagtatgcatggaatcagtgtaacaaataatgtcttttagaccttcctcccaacatatttgaatcccatgcattaatgccaaaatttcggc |
8194853 |
T |
|
| Q |
231 |
atgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
8194854 |
gtgaagaatattcgagtagccaatat |
8194879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 43246395 - 43246257
Alignment:
| Q |
9 |
agcacagatattactctcctggagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtga |
108 |
Q |
| |
|
|||||| |||||| |||||| |||||||||| ||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
43246395 |
agcacacatattatcctcctg-agagtgtgacatagttgaaaagtccaatctttagccatgtactttctaatgatagctatctcatttccatagtggtga |
43246297 |
T |
|
| Q |
109 |
gtggaaacctcagcatactgcactaggtgaatagtatgca |
148 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
43246296 |
gtggaaacatcagcatgctgcactaggtgaatagtatgca |
43246257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 30729557 - 30729509
Alignment:
| Q |
9 |
agcacagatattactctcctggagagtgtgacgtagttgaaaagtccaa |
57 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
30729557 |
agcacacatattaccctccatgagagtgtgacatagttgaaaagtccaa |
30729509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 11196106 - 11196222
Alignment:
| Q |
30 |
gagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtgagtggaaacctcagcatactgc |
129 |
Q |
| |
|
||||||||||| ||||| ||| |||||| |||| ||||||||||| ||||||||||||||||||| || |||||||||||||||| |||||||| ||| |
|
|
| T |
11196106 |
gagagtgtgacatagttaaaatgtccaaactttagccatgtactttttaataatagctatctcattttcacagtggtgagtggaaacatcagcatattgc |
11196205 |
T |
|
| Q |
130 |
actaggtgaatagtatg |
146 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
11196206 |
actgggtgaatagtatg |
11196222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 9609229 - 9609379
Alignment:
| Q |
106 |
tgagtggaaacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcc |
205 |
Q |
| |
|
||||||||||| ||| || |||||||||||||||||||||| | ||| ||||||||||||||| | | || ||||| |||||||||||||||||| |
|
|
| T |
9609229 |
tgagtggaaacatcaagattttgcactaggtgaatagtatgcatggaattggtgtaacaaataatgccttttagaccttcctcccaacaaatttgaatca |
9609328 |
T |
|
| Q |
206 |
catgcattaatgtcaagatttcggcatgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
||||||||||| | ||||||||| | |||||||||||||| ||| |||||| |
|
|
| T |
9609329 |
catgcattaatatgaagatttcgacgtgaagaatatttgaatagtcaatat |
9609379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 35407182 - 35407372
Alignment:
| Q |
16 |
atattactctcctggagagtgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagcta--tctcatttccatagtggtgagtgga |
113 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
35407182 |
atattactctccatgagagtgtgacatagttgaaaaatccaatatttagtcatgtactttctaataatagctatctctcattttcatagtggtgagcgga |
35407281 |
T |
|
| Q |
114 |
aacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatc |
204 |
Q |
| |
|
| | ||| | | | || || |||||| |||||| | ||| | | ||||||||||||| ||| || ||||||| |||||||||||||||| |
|
|
| T |
35407282 |
agcatcaacgtgattcattaaatgaatattatgcatggaatgaatataacaaataatgtctctcagaccttcattccaacaaatttgaatc |
35407372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 34446337 - 34446114
Alignment:
| Q |
35 |
tgtgacgtagttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtgagtggaaacctcagcatactgcactag |
134 |
Q |
| |
|
|||||| || ||||||| |||||| ||| ||||||||||| ||||||||||||||||| |||||| |||||| |||||| |||||| ||| || |
|
|
| T |
34446337 |
tgtgacataattgaaaattccaattcttagccatgtactttctgataatagctatctcattcccatagcggtgaggggaaacatcagcacgtcacaccag |
34446238 |
T |
|
| Q |
135 |
gtgaatagtatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaa---caaatttgaatcccatgcattaatgtcaagatttcggca |
231 |
Q |
| |
|
||||||||||||| | ||| || |||||| |||||| |||||| |||| ||| || |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34446237 |
atgaatagtatgcatgtaattcgtataacaa-taatgtctctgagacctttctcctaataacaaatttgaatcccatgcattaatgtcaagatttcgacg |
34446139 |
T |
|
| Q |
232 |
tgaagaatatttgagtagccaatat |
256 |
Q |
| |
|
|||| |||||| ||||||||||| |
|
|
| T |
34446138 |
tgaaaaatattcatgtagccaatat |
34446114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 256
Target Start/End: Complemental strand, 12286172 - 12285959
Alignment:
| Q |
43 |
agttgaaaagtccaatatttaaccatgtactttacaataatagctatctcatttccatagtggtgagtggaaacctcagcatactgcactaggtgaatag |
142 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||| ||||||| |||||| | || || || || | || | ||||| || || || ||||||| |
|
|
| T |
12286172 |
agttgaaaagtccaatctttactcatgtactttcttatagtagctatatcattttcgtaatgatggatgaagacatttgcataatgtacgagatgaatag |
12286073 |
T |
|
| Q |
143 |
tatgcacgaaatcagtgtaacaaataatgtttctgaggccttcatcccaacaaatttgaatcccatgcattaatgtcaagatttcggcatgaagaatatt |
242 |
Q |
| |
|
||| | | ||||| |||| ||||||||||||| | |||||| |||||||| |||||||||||| | || | ||| ||||| ||||||||||||| |
|
|
| T |
12286072 |
tattaatggaatcaatgtagcaaataatgtttcgcaaaacttcattccaacaaagttgaatcccatgaagcaaagccaacatttcaacatgaagaatatt |
12285973 |
T |
|
| Q |
243 |
tgagtagccaatat |
256 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
12285972 |
cgagtaaccaatat |
12285959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University