View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16587_low_2 (Length: 598)
Name: NF16587_low_2
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 17 - 589
Target Start/End: Original strand, 35928980 - 35929552
Alignment:
| Q |
17 |
tcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35928980 |
tcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgccttagcccctctt |
35929079 |
T |
|
| Q |
117 |
gaggcgtaacataaggagcagaagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929080 |
gaggcgtaacataaggagcagaagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaa |
35929179 |
T |
|
| Q |
217 |
ctcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35929180 |
ctcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttcttcatc |
35929279 |
T |
|
| Q |
317 |
ttattctcaacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929280 |
ttattctcaacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcat |
35929379 |
T |
|
| Q |
417 |
gtgaaagaaacaagagaacgatgacactagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtccttgt |
516 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929380 |
gtgaaagaaacaagagaacgatgacattagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtccttgt |
35929479 |
T |
|
| Q |
517 |
ttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttgatgat |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35929480 |
ttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgat |
35929552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 35911646 - 35912013
Alignment:
| Q |
17 |
tcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctctt |
116 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
35911646 |
tcaggatcaactgtgacatagcctgaatattggtcaaaatttaccccatagggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctctt |
35911745 |
T |
|
| Q |
117 |
gaggcgtaacataaggagcagaa------gaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaag |
210 |
Q |
| |
|
|||| | ||||| || || |||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35911746 |
gaggtgcaacatcagcagtagaaaacgaagaatgtgttttcaatgcatcttcctcttcccatgaaagagtcttaggaggattctgtgaggttctagacag |
35911845 |
T |
|
| Q |
211 |
aataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttc |
310 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
35911846 |
aataaactcaacaagtttatcagcttgactagctttgcaatatggaaaaataaccaatagactcaagttgagtagtaaacaagcataaagagaaaccttc |
35911945 |
T |
|
| Q |
311 |
tccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagatacaaaacagtg |
377 |
Q |
| |
|
| |||||| |||||||||||| ||| ||||||| | |||||||| |||||||||||| ||||||||| |
|
|
| T |
35911946 |
ttcatcttgttctcaacttggcttcaatatatcataagtttctaactatttatagatgaaaaacagtg |
35912013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 17 - 576
Target Start/End: Original strand, 35916033 - 35916630
Alignment:
| Q |
17 |
tcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctctt |
116 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||| ||| | |||||| |||||| |
|
|
| T |
35916033 |
tcaggatcaactgtgacatagcctgaatattggtcaaaatttactccatagggttgaccaggcaatgtgacgatcttgtctgctagtcttagctcctctt |
35916132 |
T |
|
| Q |
117 |
gaggcgt---aacataaggagcagaa---gaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaag |
210 |
Q |
| |
|
|||| | |||||||| ||||||| |||| |||||| |||||||| |||||||||||||||| ||||||||||||||||| || ||||||| || |
|
|
| T |
35916133 |
gaggtggtgcaacataagcagcagaaaaagaatgtgttttcaatgcatctccctcttcccaagaaagtgtcttaggaggattctgagattttctagacag |
35916232 |
T |
|
| Q |
211 |
aataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaac---tcacgctgagtagtaaacaagcataaagagaaacc |
307 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||| |
|
|
| T |
35916233 |
aataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaaaagactgatcaaattgagtaataaacaagcataaagagaaacc |
35916332 |
T |
|
| Q |
308 |
ttctccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgtt---ttgttg |
403 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||| | |||||||| |||||||||||| |||||| ||| | | || ||| ||| || ||||| |
|
|
| T |
35916333 |
ttcttcatcttgttctcaacttggtttcaatatatcataagtttctaactatttatagatgaaaaacattgacaattttgaaggacttatttggttgttc |
35916432 |
T |
|
| Q |
404 |
tggttggaggcatgtgaaagaaacaagagaacgatgaca-ctagtattga---------------ccaggcaatgatcagccggct-gatttaatatagt |
486 |
Q |
| |
|
| ||||||| |||||||||||||||||||| ||| ||| ||| ||||| ||| ||| ||||||||||||| |||||| |||| |
|
|
| T |
35916433 |
ttgttggagccatgtgaaagaaacaagagagagataacatctaccattgaggcattgaccaatgtccatgcattgatcagccggctatgtttaatttagt |
35916532 |
T |
|
| Q |
487 |
---ttctccttgaatgtaat-----ggattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttt |
576 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35916533 |
ttcttctccttgaatgtaatgtaagggattgtcattgtttccctttttctagaatcatatcaagttatttaacgttttagcactttgtgattaacttt |
35916630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 35922302 - 35922658
Alignment:
| Q |
17 |
tcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctctt |
116 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| | |||||| |||||| |
|
|
| T |
35922302 |
tcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
35922401 |
T |
|
| Q |
117 |
gaggcgt---aacataaggagcagaa---gaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaag |
210 |
Q |
| |
|
|||| | |||||||| ||||||| |||| |||||| |||||||| |||||||||||||||| ||||| ||||||||||| || ||||||| || |
|
|
| T |
35922402 |
gaggtggtgcaacataagcagcagaaaaagaatgtgttttcaatgcatctccctcttcccaagaaagtgtcttgggaggattctgagattttctagacag |
35922501 |
T |
|
| Q |
211 |
aataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttc |
310 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
35922502 |
aataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttc |
35922601 |
T |
|
| Q |
311 |
tccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagat |
366 |
Q |
| |
|
| |||||| |||||||||||||||| | ||||| | |||||||| | |||||||||| |
|
|
| T |
35922602 |
ttcatcttgttctcaacttggtttcaacatatcataagtttctaacaatttatagat |
35922658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 35941167 - 35941497
Alignment:
| Q |
17 |
tcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctctt |
116 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| | |||||| |||||| |
|
|
| T |
35941167 |
tcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
35941266 |
T |
|
| Q |
117 |
gaggcgt---aacataaggagcagaagaatc---tgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaag |
210 |
Q |
| |
|
|||| | |||||||| ||| |||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||| || ||||||| || |
|
|
| T |
35941267 |
gaggtggtgcaacataagcagccgaagaaaaaagtgttttcaatgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagacag |
35941366 |
T |
|
| Q |
211 |
aataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttc |
310 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
35941367 |
aataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaataaactcaagttgagtattaaacaagcataaagagaaaccttc |
35941466 |
T |
|
| Q |
311 |
tccatcttattctcaacttggtttccatata |
341 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||| |
|
|
| T |
35941467 |
tccatcttgttctcaacttgatttctatata |
35941497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 25 - 589
Target Start/End: Original strand, 35935625 - 35936206
Alignment:
| Q |
25 |
aacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgaggcgt- |
123 |
Q |
| |
|
|||||| ||||| || || ||||||||||||| || |||| ||||||||||||||||| | |||||||||||| | |||||| |||||||||| | |
|
|
| T |
35935625 |
aacagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgaggtgct |
35935724 |
T |
|
| Q |
124 |
--aacataaggagcagaagaatc---tgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaact |
218 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| ||| |||||||||||||||||||||| |||||||||||||| ||||||| |||| || || |
|
|
| T |
35935725 |
gcaacataagcagcagaagaagaaagtgttttcaatgcttctccctcttcccaagaaagagtcttgggaggattctgtgattttctagacagaaaaagct |
35935824 |
T |
|
| Q |
219 |
catcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatctt |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||| | ||||| | |||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
35935825 |
catcaagtttatcagcttgactagctttgctataaggaaaaataaccaagagactcaagttgagtaataaacaagcataaagagaaattttcttcatctt |
35935924 |
T |
|
| Q |
319 |
attctcaacttgg-tttccatatatcttagtttc-tat----ctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggag |
412 |
Q |
| |
|
|||| || |||| ||| ||||| || |||||| ||| ||||||||||||| ||||||||| | | || | | ||||||||||||| |||||| |
|
|
| T |
35935925 |
gttcttaagttggttttgtatata-ctaagtttcttatcttactatttatagataaaaaacagtggcaattttgcatgacttgttttgttgttgttgga- |
35936022 |
T |
|
| Q |
413 |
gcatgtgaaagaaacaagagaacgatgacactagtat-------tgaccaggcaatgatcagccggct-gatttaatatagtttctccttgaatgtaatg |
504 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || ||| |||||| |||| |||||||||||| | |||||| |||||||| |||||||| |||| |
|
|
| T |
35936023 |
gcatgtgaaagaaacaagagtgtgataacattactattgactactgaccatgcaa-gatcagccggctggttttaatttagtttcttcttgaatgcaatg |
35936121 |
T |
|
| Q |
505 |
gattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttgatgat |
589 |
Q |
| |
|
||||||| |||||||||| ||| |||| |||| |||||||||||||||||||||||||||| ||||||||| ||| || ||||| |
|
|
| T |
35936122 |
gattgtctttgtttccctgtttgtagaatcataacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgat |
35936206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 576
Target Start/End: Original strand, 35941632 - 35941721
Alignment:
| Q |
487 |
ttctccttgaatgtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttt |
576 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35941632 |
ttctccttgaatgtaattgtttt--cttgttttcctttttctagaatcatgtatcaagttatttaacaatttagcactttgtaattaacttt |
35941721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 576
Target Start/End: Original strand, 35912129 - 35912208
Alignment:
| Q |
499 |
gtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttt |
576 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
35912129 |
gtaatggattgttcttgtttccgtttttctagaatcatgtatcaagttatttaacattttagtactatgtgattaacttt |
35912208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 589
Target Start/End: Original strand, 35922772 - 35922870
Alignment:
| Q |
494 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttgatgat |
589 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||| ||| || ||||| |
|
|
| T |
35922772 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatgat |
35922870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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