View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_24 (Length: 230)
Name: NF16587_low_24
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 42626838 - 42626628
Alignment:
| Q |
1 |
agatagtatatgattaaatgagaaagagagaaatgaaagaaaaagaacctgagcaacagtctcgccatcagccttctttggtgaggttggaacctcaact |
100 |
Q |
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| T |
42626838 |
agatagtatatgattaaatgagaaagagagaaatgaaagaaaaagaacctgagcaacagtctcgccatcagccttctttggtgaggttggaacctcaact |
42626739 |
T |
|
| Q |
101 |
ggagcttccccttcgttcacagcaaaatccttaggagtactcacacaacctcccatgattcaatttagattgttaaacaaagagagtgaaagggaggtgt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42626738 |
ggggcttccccttcgttcacagcaaaatccttaggagtactcacacaacctcccatgattcaatttagattgttaaacaaagagagtgaaagggaggtgt |
42626639 |
T |
|
| Q |
201 |
gtggtttaatt |
211 |
Q |
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||||||||||| |
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| T |
42626638 |
gtggtttaatt |
42626628 |
T |
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