View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_26 (Length: 222)
Name: NF16587_low_26
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34896083 - 34895863
Alignment:
| Q |
1 |
gttgttacaatgcccatgggaaactctaagaatcccaaatttaaaatttattcatttaaaaatcaaatattacaaattctgatatattgaatacaaatat |
100 |
Q |
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| T |
34896083 |
gttgttacaatgcccataggaaactctaagaatcccaaatttaaaaattattcatttaaaaatcaaatattacaaattctgatacattgaatacacatat |
34895984 |
T |
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| Q |
101 |
ttttatnnnnnnnncttaccattaaaaatccttaaaaagtgcttgaagataattaaacatttgcctttaaaaaagcgaaatgctaacaaatgcttttgga |
200 |
Q |
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|||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34895983 |
ttttataaaaaaaaattaccattaaaagttcttaaaaagtgctcgaagataattaaacatttgcctttaaaaaagcgaattgctaacaaatgcttttggg |
34895884 |
T |
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| Q |
201 |
acatttgttaagaaactaaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34895883 |
acatttgttaagaaactaaaa |
34895863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 24762818 - 24762738
Alignment:
| Q |
27 |
taagaatcccaaatttaaaatttattcatttaaaaa-tcaaatattacaaattctgatatattgaatacaaatatttttat |
106 |
Q |
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|||| |||||||||||| || ||||| || ||||| ||||||||||||||||| ||||||||| || | |||||||||| |
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| T |
24762818 |
taaggatcccaaatttagaaaatattccttaaaaaagtcaaatattacaaattccaatatattgattatacatatttttat |
24762738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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