View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_27 (Length: 202)
Name: NF16587_low_27
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 55180303 - 55180468
Alignment:
| Q |
18 |
tactaacgcacagtagctcttacactatagataaataagtcgaaaattgtaaattcaaccagtgacggatcgaaataaggaaaactagcagcatagcaga |
117 |
Q |
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| T |
55180303 |
tactaacgcacagtagctcttacactaaagataaataagtcgaaaattgtaaattcaaccagtgacggatcgaaataaggaaaactagcagcatagcaga |
55180402 |
T |
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| Q |
118 |
aacaatcacaataacatggttctaatacaatgttcttatccaatgccagcagcagcaagtactttt |
183 |
Q |
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| T |
55180403 |
aacaatcacaataacatggttctaatacaatgttcttatccaatgccagcagcagcaagtactttt |
55180468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 30223013 - 30223061
Alignment:
| Q |
113 |
gcagaaacaatcacaataacatggttctaatacaatgttcttatccaat |
161 |
Q |
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| T |
30223013 |
gcagaaacaatcccaataaaatggttctgatacaatgttcttttccaat |
30223061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 9634207 - 9634344
Alignment:
| Q |
29 |
agtagctcttacactatagataaataagtcgaaaattgtaaattcaaccagtgacggatcgaaataag-----gaaaactagcagcatagcagaaacaat |
123 |
Q |
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||||||||||||| |||||||||| |||| |||||||||||||||| || |||||| ||| || |||| ||| |||||||||| ||||||| |
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| T |
9634207 |
agtagctcttacagtatagataaacaagttcaaaattgtaaattcaatcaaagacggaagaaaaaaaaaataagaaatctaacagcatagcaaaaacaat |
9634306 |
T |
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| Q |
124 |
cacaataacatggttctaatacaatgttcttatccaat |
161 |
Q |
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| T |
9634307 |
ctcaataaaatggttctgatacaatgttcttatccaat |
9634344 |
T |
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