View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_5 (Length: 481)
Name: NF16587_low_5
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Original strand, 32736886 - 32737332
Alignment:
| Q |
17 |
tactactgtataatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctcttgtcatgtggtaacccttt |
116 |
Q |
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| T |
32736886 |
tactactatataatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctcttgtcatgtggtaacccttt |
32736985 |
T |
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| Q |
117 |
tttcatgtggtaacactgcaatgcccaactaggaaacattccatacttccaatggtgttgagctttcatctctaccactaagcaatcctctttcccactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32736986 |
tttcatgtggtaacactgcaatgcccaactaggaaacattccatacttccaatggttttgagctttcatctctaccactaagcaaccctctttcccactt |
32737085 |
T |
|
| Q |
217 |
gtctataattaggcgaatctctgcttcaaatctgattttattcacaatttgtaatataatagagaacatttattttatgccgatcaaaggaataaatttt |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32737086 |
gtctataattaggcgaatctatgcttcaaatctgatttcattcacaatttgtaatataatagagaacatttattttatgccgatcaaaggaataaatttt |
32737185 |
T |
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| Q |
317 |
aatctcaattttttcaagtaaagttcacaagacaaaacattaaattatggaatcacattgataatccctatgaaggagtttatggtactacattacatac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32737186 |
aatctcaattttttcaagtaaagttcacaagacaaaacattaaattatggaatcacattgataatccctatgaagtagtttatggtactacattacatac |
32737285 |
T |
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| Q |
417 |
acacgagactacaaataatagtact-actagtgtctagtgctagaaa |
462 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
32737286 |
acacgagactacaaataatagtactaactagtgtcaagtgctagaaa |
32737332 |
T |
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