View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_6 (Length: 473)
Name: NF16587_low_6
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 30 - 455
Target Start/End: Original strand, 29434519 - 29434945
Alignment:
| Q |
30 |
ttgattcaagaaattaaataattatttaagtcagcaatctgagttttctataagcacttaattaaattgtgcatccaaacaagttctatgacataagtac |
129 |
Q |
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| T |
29434519 |
ttgattcaagaaattaaataaatatttaagtcagcaatctgagttttctataagcacttaattaaattgtgcatccaaacaagttctatgacataagtac |
29434618 |
T |
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| Q |
130 |
tagtgtaaatttttggaaaagcctctgaaaatagcttaggttaagtttttaaatcattttcagctttt-tcacaagttcttccagatagctcattgtcat |
228 |
Q |
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| T |
29434619 |
tagtgtaaatttttggaaaagcatctgaaaatagcttaggttaagtttttaaaacattttcagcttttttcacaagttcttccagatagctcattgtcat |
29434718 |
T |
|
| Q |
229 |
acgctataactcttggcatatgtagattatgccttcgtttcctctttgattatacagacaacttatacataagttcatgtacgataagcactgaatttat |
328 |
Q |
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| T |
29434719 |
acgctataactcttggcatatgtggattatgccttcgtttcctctttgattatacagacaacttatacataagttcatgtacgataagcactgaatttat |
29434818 |
T |
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| Q |
329 |
acatatgaaacaggtattttatagagaaaggatgaatggatactacggagtagcagcctatattttagcaaactttatttcatcattcccattcctggtt |
428 |
Q |
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| T |
29434819 |
acatatgaaacaggtattttatagagaaaggatgaatggatactacggagtagcagcctatattttagcaaactttatttcatcattcccattcctggtt |
29434918 |
T |
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| Q |
429 |
gttattgctcttacttcttgcacaatc |
455 |
Q |
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| T |
29434919 |
gttattgctcttacttcttgcacaatc |
29434945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 334 - 455
Target Start/End: Original strand, 29468047 - 29468168
Alignment:
| Q |
334 |
tgaaacaggtattttatagagaaaggatgaatggatactacggagtagcagcctatattttagcaaactttatttcatcattcccattcctggttgttat |
433 |
Q |
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| T |
29468047 |
tgaaacaggtattttatagagaaaggatgaatggatattatggtgtagcagcatttattttatcaaactttctttcatcattcccattcttggttgctat |
29468146 |
T |
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| Q |
434 |
tgctcttacttcttgcacaatc |
455 |
Q |
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| T |
29468147 |
tgctcttacttcttgcacaatc |
29468168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 295
Target Start/End: Original strand, 29467786 - 29467968
Alignment:
| Q |
115 |
ctatgacataagtactagtgtaaatttttggaaaagcctctgaaaatagcttaggttaagtttttaaatcattttcagct--ttttcacaagttcttcca |
212 |
Q |
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| T |
29467786 |
ctatgccataagcacttgtataagtctttgcaagagcctctgaaaatagcttatgctaagtctaaatattattttcagttcattttcataagctctttca |
29467885 |
T |
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| Q |
213 |
gatagctcattgtcatacgctataactcttggcatatgtagattatgccttcgtttcctctttgattatacagacaacttata |
295 |
Q |
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| T |
29467886 |
gatagctcagtgtcataagttataacttttagcatatgcagagtttaccttcatttcaactttgattatagaaccaacttata |
29467968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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