View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_8 (Length: 399)
Name: NF16587_low_8
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 52270357 - 52269975
Alignment:
| Q |
1 |
actgtgatggtaacaaacatgcttattcaaatcgacctctccttttgtaaatgctatttaaatatgcaatattgtttacgtcatttatattctactgtca |
100 |
Q |
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| T |
52270357 |
actgtgatggtaacaaacatgcttattggaatcgacctctccttttgtaaatgctatttaaatatgcaatattgtttacgtcatttatattctactgtca |
52270258 |
T |
|
| Q |
101 |
tactgactgctggtttctctgtttggttgtaactcagattataagggagagtcaagcacccaaagttgtttctaccaaattccaaagaaatacacagaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52270257 |
tactgactgctggtttctctgtttggttgtaactcagattataagggagagtcaagcacccaaagttgtttctaccaaattccaaagaaatactcagaac |
52270158 |
T |
|
| Q |
201 |
aaatatgccacttcaacttctaaatctcaagagtcaaatgtatcgctgatggaggtattaagcaggtcctcaaatcatacaaagcgttgtgtcaagaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52270157 |
aaatatgccacttcaacttctaaatctcaagagtcaaatgtatcactgatggaggtattaagcaggtcctcaaatcgtacaaagcgttgtgtcaagaatg |
52270058 |
T |
|
| Q |
301 |
ttgaagttcagcaaaatgaatctatattcgaagcatttaagttaaccaagaagtcaattaagacaggggaaagagtttgatgt |
383 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270057 |
ttggagttcagcaaaatgaatctatattcgaagcatttaagttaaccaagaagtcaattaagacaggggaaagagtttgatgt |
52269975 |
T |
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