View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16587_low_9 (Length: 383)
Name: NF16587_low_9
Description: NF16587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16587_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 35239645 - 35239291
Alignment:
| Q |
19 |
taacaacagtgaaaaatgagacacgttgggtcagttagtcaataatcacaacaaacacaccacaaacctcgttcatcacaaacaataaataacgtaaaat |
118 |
Q |
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| T |
35239645 |
taacaacagtgaaaaatgagacacgttgggtcagttagtcaataatcacaacaaacacaccacaaacctcgttcatcacaaacaataaataacgtaaaat |
35239546 |
T |
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| Q |
119 |
atttcttaattcttcttttgcatgatactacatgctaactctgttaattcatgaaccccacacgttcccatgaagatgtgtgagtacaatgctagatgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35239545 |
atttcttaattcttcttttgcatgatactacatgctaactctgttaattcatgaaccctacacgttcccatgaagatgtgtgagtacaatgctagatgtt |
35239446 |
T |
|
| Q |
219 |
attctttccttattctttgattttgttacttaaacttcgttttattttctgtagtttccgaatgtacatgtatgattacctgaagaagcgtggattgtcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35239445 |
attctttccttattctttgattttgttacttaaacttcgttttattttctgtagtttccgaatgtacatgtatgattacctgaagaagcgtggattgtcc |
35239346 |
T |
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| Q |
319 |
tatactgctgaaattttcagaaaggaaggccatgttactacacaacctccctttg |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35239345 |
tatactgctgaaattttcagaaaggaaggccatgttactacacaacctccctttg |
35239291 |
T |
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