View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16588_high_12 (Length: 358)
Name: NF16588_high_12
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 4476982 - 4476647
Alignment:
| Q |
13 |
aggcagctagccatgtcataggaagaaaatgggccccaatccctgctgtaatggcgacatttactgtgtcagggttgatgcatgatttgatcttctatta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4476982 |
aggcagctagccatgtcataggaagaaaatgggccccaatccctgctgtaatggtgacatttactgtgtcagggttgatgcatgatttgatcttctatca |
4476883 |
T |
|
| Q |
113 |
catgaagagggaaaaggccacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccatggggtgtgtgtggctcttgaaattgca |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4476882 |
catgaagagggagaaggccacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccatggggtgtgtgtggctcttgaaattgca |
4476783 |
T |
|
| Q |
213 |
tacaagaagatcttcaaaccaaaacaccagttattaccaagggttgtgtcttgtaccctaacaatggccttcgttgtgtctactgcgttatacttctttg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4476782 |
tacaagaagatcttcaaaccaaaacaccagttattaccaagggttgtgtcttgtaccctcacaatggccttcgttgtgtctactgcgttatacttctttg |
4476683 |
T |
|
| Q |
313 |
ttccagctcttgttaggtctggtgtaacattcaaac |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4476682 |
ttccagctcttgttaggtctggtgtaacattcaaac |
4476647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 55653774 - 55653453
Alignment:
| Q |
19 |
ctagccatgtcataggaagaaaatgggccccaatccctgctgtaatggcgacatttactgtgtcagggttgatgcatgatttgatcttctattacatgaa |
118 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||| ||||||| || |||| || ||||| |||||||| ||||||||||| | || || |||||||| || |
|
|
| T |
55653774 |
ctagccatttcatcggaagaaaatgggctccactccctgccgtggtggcaacttttacagtgtcaggtttgatgcatgagctaatattttattacataaa |
55653675 |
T |
|
| Q |
119 |
gagggaaaag---gccacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccatggggtgtgtgtggctcttgaaattgcatac |
215 |
Q |
| |
|
| |||||| | |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||| ||||||| || |
|
|
| T |
55653674 |
acgtgaaaagaaggatacatgggaagcttgggaaccatgttgggattcaatgtgctttttcttcatccatggggtgtgtttggctcttcaaattgcgtat |
55653575 |
T |
|
| Q |
216 |
aagaagatcttcaaaccaaaacaccagttattaccaagggttgtgtcttgtaccctaacaatggccttcgttgtgtctactgcgttatacttctttgttc |
315 |
Q |
| |
|
|||||| | || ||||||||| | ||||| ||||||||||||||||||| || ||||||| || || |||||||||| ||| | ||||||| | |
|
|
| T |
55653574 |
aagaaggtatttgaaccaaaacgtgaattattgccaagggttgtgtcttgtatacttacaatggtttttgtggtgtctactggaatatgcctctttgtgc |
55653475 |
T |
|
| Q |
316 |
cagctcttgttaggtctggtgt |
337 |
Q |
| |
|
| ||||||||||||| |||||| |
|
|
| T |
55653474 |
cggctcttgttaggtgtggtgt |
55653453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 131 - 280
Target Start/End: Complemental strand, 55662220 - 55662070
Alignment:
| Q |
131 |
cacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccat-ggggtgtgtgtggctcttgaaattgcatacaagaagatcttcaa |
229 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| ||||||||| |||||||| |||||| ||| |||||| | ||||| |
|
|
| T |
55662220 |
cacatgggaggcttgggagccatattgggattcaatgtgcttcttcttcatccatgggggtgtgtttggctcttcaaattgaatataagaaggtattcaa |
55662121 |
T |
|
| Q |
230 |
accaaaacaccagttattaccaagggttgtgtcttgtaccctaacaatggc |
280 |
Q |
| |
|
||| ||| | ||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
55662120 |
accgaaaggtgaattattgccaagggttgtgtcttgtatacttacaatggc |
55662070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University