View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_18 (Length: 315)
Name: NF16588_high_18
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 29504073 - 29504359
Alignment:
| Q |
14 |
cataggggcaatgcgaaggttttcgagagatctacaactgcaaatgtggccgcatcagccatatcatctgcaaattttcacacatcaatgattgtgatta |
113 |
Q |
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| T |
29504073 |
cataggggcaatgcgaaggttttcgagagatctacaactgcaaatgtggccccatcagccatatcatctgcaaattttcacacatcaatgattgtgatta |
29504172 |
T |
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| Q |
114 |
aattgcaacatcaatcacacaatgaaaccttactaaacattagcaccattaagacgatatacgtaactttgatcattattcatctaaacaataagataga |
213 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29504173 |
aattgcaacatcaatcacacaatgaaaccttactgaacattagcaccattaagacgatatacgtaacattgatcattattcatctaaacaataagataga |
29504272 |
T |
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| Q |
214 |
caaaagtttgtgggatcactgactacattgcaggcttgtagcctaggaaatattgatgcagacacaactctggcatgtagacatcat |
300 |
Q |
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| T |
29504273 |
caaaagtttgtgggatcactgactacattgcaggcttgtagcctacgaaatattgatgcagacacaactatggcatgtagacatcat |
29504359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 8806990 - 8806853
Alignment:
| Q |
29 |
aaggttttcgagagatctacaactgcaaatgtggccgcatcagccatatcatctgcaaattttcacacatcaa-tgattgtgattaaattgcaacatcaa |
127 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||| ||||||| ||| ||||||| | ||| |
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| T |
8806990 |
aaggttttcgagagatctacaactgcaaatgtggctgcatcagccatagcttcttcaaattttcacacatcaagtgattgtaattgcattgcaataacaa |
8806891 |
T |
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| Q |
128 |
tcacacaatgaaaccttactaaacattagcaccattaa |
165 |
Q |
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| T |
8806890 |
tcgcaatttgaaaccttactaaacataaccaccattaa |
8806853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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