View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16588_high_21 (Length: 299)

Name: NF16588_high_21
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16588_high_21
NF16588_high_21
[»] chr3 (61 HSPs)
chr3 (1-286)||(2442027-2442312)
chr3 (12-69)||(2644357-2644414)
chr3 (12-69)||(2659147-2659204)
chr3 (13-69)||(2696727-2696783)
chr3 (13-69)||(4142129-4142185)
chr3 (13-69)||(4157939-4157995)
chr3 (13-79)||(3754600-3754666)
chr3 (12-62)||(13498223-13498273)
chr3 (12-64)||(754609-754661)
chr3 (12-64)||(2456248-2456300)
chr3 (12-64)||(7324431-7324483)
chr3 (12-64)||(7942484-7942536)
chr3 (13-76)||(989396-989459)
chr3 (13-64)||(1891064-1891115)
chr3 (13-68)||(7432050-7432105)
chr3 (13-79)||(1940564-1940630)
chr3 (15-65)||(2459277-2459327)
chr3 (14-64)||(2492083-2492133)
chr3 (14-64)||(2631358-2631408)
chr3 (12-62)||(9561987-9562037)
chr3 (10-76)||(12133094-12133160)
chr3 (12-69)||(2476633-2476690)
chr3 (12-69)||(2502147-2502204)
chr3 (12-69)||(7334234-7334291)
chr3 (13-62)||(9608346-9608395)
chr3 (14-66)||(768327-768379)
chr3 (12-64)||(771499-771551)
chr3 (13-69)||(803213-803269)
chr3 (12-64)||(7430536-7430588)
chr3 (12-64)||(9565829-9565881)
chr3 (12-64)||(37753345-37753397)
chr3 (12-64)||(43991959-43992011)
chr3 (13-76)||(968671-968734)
chr3 (13-76)||(1931142-1931205)
chr3 (234-272)||(763341-763379)
chr3 (13-67)||(956381-956435)
chr3 (241-286)||(1889363-1889409)
chr3 (14-64)||(7442977-7443027)
chr3 (13-74)||(1007461-1007522)
chr3 (240-277)||(1930950-1930987)
chr3 (13-69)||(1022489-1022545)
chr3 (12-64)||(1437995-1438046)
chr3 (241-277)||(1897452-1897488)
chr3 (241-277)||(1906898-1906934)
chr3 (241-277)||(2932152-2932188)
chr3 (16-64)||(9587185-9587233)
chr3 (14-66)||(9594622-9594674)
chr3 (25-64)||(746383-746422)
chr3 (22-69)||(2686307-2686354)
chr3 (241-286)||(1890829-1890875)
chr3 (13-75)||(1936969-1937031)
chr3 (15-65)||(7398178-7398228)
chr3 (15-65)||(23197014-23197064)
chr3 (15-60)||(997578-997623)
chr3 (15-60)||(1013968-1014013)
chr3 (240-284)||(12218278-12218323)
chr3 (12-64)||(783799-783851)
chr3 (13-69)||(792899-792955)
chr3 (241-277)||(1936761-1936797)
chr3 (13-69)||(2678394-2678450)
chr3 (17-65)||(3746012-3746060)
[»] chr2 (12 HSPs)
chr2 (13-66)||(7160752-7160805)
chr2 (23-67)||(6538844-6538888)
chr2 (13-66)||(7156190-7156243)
chr2 (13-65)||(36577366-36577418)
chr2 (16-66)||(7168688-7168738)
chr2 (13-66)||(7174371-7174424)
chr2 (13-66)||(11237693-11237746)
chr2 (13-64)||(33038160-33038211)
chr2 (14-64)||(33020314-33020364)
chr2 (13-66)||(7199976-7200029)
chr2 (12-64)||(33026656-33026708)
chr2 (12-64)||(34560917-34560969)
[»] chr7 (3 HSPs)
chr7 (10-82)||(1078142-1078214)
chr7 (17-66)||(3927063-3927112)
chr7 (13-63)||(1421170-1421220)
[»] chr5 (15 HSPs)
chr5 (13-65)||(11081813-11081865)
chr5 (13-69)||(23766857-23766913)
chr5 (13-69)||(23816705-23816761)
chr5 (13-69)||(23769641-23769697)
chr5 (13-69)||(23819489-23819545)
chr5 (12-62)||(20292994-20293044)
chr5 (6-42)||(2067074-2067110)
chr5 (12-62)||(20301442-20301492)
chr5 (12-62)||(20305855-20305905)
chr5 (12-62)||(20310259-20310309)
chr5 (13-69)||(23732167-23732223)
chr5 (13-68)||(1427689-1427744)
chr5 (125-155)||(11081925-11081955)
chr5 (243-286)||(1427464-1427508)
chr5 (13-69)||(23861021-23861077)
[»] chr6 (14 HSPs)
chr6 (24-72)||(176345-176393)
chr6 (16-76)||(370773-370833)
chr6 (23-69)||(1442103-1442149)
chr6 (14-64)||(24417486-24417536)
chr6 (17-67)||(7564748-7564798)
chr6 (12-65)||(1470922-1470975)
chr6 (12-62)||(9819831-9819881)
chr6 (15-65)||(19119065-19119115)
chr6 (15-65)||(19126359-19126409)
chr6 (12-65)||(1459540-1459593)
chr6 (17-62)||(9703888-9703933)
chr6 (13-65)||(4183000-4183052)
chr6 (13-65)||(4743844-4743896)
chr6 (13-65)||(17368366-17368418)
[»] chr4 (6 HSPs)
chr4 (17-75)||(20016174-20016232)
chr4 (13-75)||(20019761-20019823)
chr4 (16-76)||(22672115-22672175)
chr4 (23-65)||(55419792-55419834)
chr4 (241-285)||(22671911-22671956)
chr4 (240-276)||(20019551-20019587)
[»] scaffold0044 (1 HSPs)
scaffold0044 (17-64)||(89147-89194)
[»] scaffold0015 (1 HSPs)
scaffold0015 (13-63)||(32330-32380)
[»] chr1 (7 HSPs)
chr1 (17-67)||(51381452-51381502)
chr1 (13-65)||(51858606-51858658)
chr1 (13-54)||(23896147-23896188)
chr1 (13-62)||(24629213-24629262)
chr1 (13-62)||(51782799-51782848)
chr1 (13-65)||(51756749-51756801)
chr1 (13-65)||(51854947-51854999)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 61)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 2442027 - 2442312
Alignment:
Q  1 tcggttatgaaggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtaggtcgaggtgtatctc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2442027 tcggttctgaaggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatcgaggtgtatctc 2442126  T
Q  101 atatttctgccaagccggtacatttatttgaggatgatcaagtgttgttgaagttgacaggggcgtttaattcgtttgtttacgattccaggagtggtac 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442127 atatttctgccaagccggtatatttatttgaggatgatcaagtgttgttgaagttgacaggggcgtttaattcgtttgtttacgattccaggagtggtac 2442226  T
Q  201 tttcaagtctagtgattttcaaaacatcttaggagtctctgttgagagtttaatatcaccttgttcttaatgctagatgtagatgt 286  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442227 tttaaagtctagtgattttcaaaacatcttaggagtctctgttgagagtttaatatcaccttgttcttaatgctagatgtagatgt 2442312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 2644414 - 2644357
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  2644414 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacact 2644357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 2659204 - 2659147
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  2659204 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacact 2659147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 2696783 - 2696727
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 4142185 - 4142129
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4142129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 4157995 - 4157939
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 3754600 - 3754666
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgca 79  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| || ||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattccttgca 3754666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 13498223 - 13498273
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  13498223 ggatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 754661 - 754609
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  754661 ggatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 2456248 - 2456300
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  2456248 ggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 7324483 - 7324431
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  7324483 ggatgtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 7942484 - 7942536
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  7942484 ggatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgt 7942536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 989396 - 989459
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 76  Q
    ||||||||| | ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttctt 989459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 1891115 - 1891064
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 7432105 - 7432050
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcac 68  Q
    |||||||||| ||||||||| |||||||||||||| || |||||||||||||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcac 7432050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 1940630 - 1940564
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgca 79  Q
    ||||||||| ||||||||||  |||||||| |||| || |||||||||||||||||| |||||||||    
T  1940630 gatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttcttgca 1940564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 2459277 - 2459327
Alignment:
Q  15 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 2492083 - 2492133
Alignment:
Q  14 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 2631358 - 2631408
Alignment:
Q  14 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 9562037 - 9561987
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  9562037 ggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 12133094 - 12133160
Alignment:
Q  10 aaggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 76  Q
    |||||||||||| |||||| |||||||||||||| ||| || |||||||||||||||| | ||||||    
T  12133094 aaggatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttcaatgtttctt 12133160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 2476633 - 2476690
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||||||||||  | |||||||||||||| |||||||||||||||| ||||    
T  2476633 ggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacact 2476690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 2502147 - 2502204
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||| ||| ||||    
T  2502147 ggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacact 2502204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 7334291 - 7334234
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    |||||||||||| |||||||| || ||||||||||| |||||||||||||||| ||||    
T  7334291 ggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacact 7334234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 9608395 - 9608346
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  9608395 gatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 768379 - 768327
Alignment:
Q  14 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttc 768327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 771551 - 771499
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||| |||||||||| |||||||||| ||| ||||||||||||||||    
T  771551 ggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 803269 - 803213
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||| ||||||| || |||||||||||||| ||||||||||| |||||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 7430588 - 7430536
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||||| |||||||||||||| | |||| |||||||||||    
T  7430588 ggatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgt 7430536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 9565881 - 9565829
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||||    
T  9565881 ggatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgt 9565829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 37753397 - 37753345
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||||||||| |||| |||||||| ||||| ||||||||||||||||    
T  37753397 ggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 43991959 - 43992011
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||| |||||||    
T  43991959 ggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgt 43992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 968671 - 968734
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 76  Q
    ||||||||| ||||||||||  ||||||||||||| || ||||||||||| |||||| ||||||    
T  968671 gatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactatttctt 968734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 1931205 - 1931142
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 76  Q
    ||||||||| |||||| |||  ||||||||||||| || |||||||||||||||||| ||||||    
T  1931205 gatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttctt 1931142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 763379 - 763341
Alignment:
Q  234 agtctctgttgagagtttaatatcaccttgttcttaatg 272  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  763379 agtctatgttgagagtttaatatcaccttgttcttaatg 763341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 956381 - 956435
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttca 67  Q
    |||||||||||||||||||| |||||||| ||||| ||||||  |||||||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttca 956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 1889409 - 1889363
Alignment:
Q  241 gttgagagtttaatatcaccttgttcttaatgctag-atgtagatgt 286  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  1889409 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgt 1889363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 7443027 - 7442977
Alignment:
Q  14 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||| ||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgt 7442977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 1007461 - 1007522
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttc 74  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||||| ||||    
T  1007461 gatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatttc 1007522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 1930987 - 1930950
Alignment:
Q  240 tgttgagagtttaatatcaccttgttcttaatgctaga 277  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1930987 tgttgagagtttgatatcaccttgttcttaatgctaga 1930950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1022489 - 1022545
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||| | |||||||| ||||||||||| || || ||||||||||||||||||    
T  1022489 gatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcact 1022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 1437995 - 1438046
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| ||||||||    
T  1437995 ggatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 1897488 - 1897452
Alignment:
Q  241 gttgagagtttaatatcaccttgttcttaatgctaga 277  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1897488 gttgagagtttgatatcaccttgttcttaatgctaga 1897452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 1906934 - 1906898
Alignment:
Q  241 gttgagagtttaatatcaccttgttcttaatgctaga 277  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1906934 gttgagagtttgatatcaccttgttcttaatgctaga 1906898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 2932152 - 2932188
Alignment:
Q  241 gttgagagtttaatatcaccttgttcttaatgctaga 277  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2932152 gttgagagtttgatatcaccttgttcttaatgctaga 2932188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9587233 - 9587185
Alignment:
Q  16 gtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||| ||||||||||||||  ||||||| |||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgt 9587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 9594674 - 9594622
Alignment:
Q  14 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    ||||||||||||||||  |||| |||||| |||| ||||||||||||||||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttc 9594622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 746422 - 746383
Alignment:
Q  25 atgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgt 746383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 2686354 - 2686307
Alignment:
Q  22 attatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||| |||||||| ||||| ||||||| |||||||||||||    
T  2686354 attatgaaggaatatggaaaaaaagagtcttggaataaattgttcact 2686307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 1890875 - 1890829
Alignment:
Q  241 gttgagagtttaatatcaccttgttcttaatgctag-atgtagatgt 286  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  1890875 gttgagagtttgatatcgccttgttcttaatgctagaatgtagatgt 1890829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 1937031 - 1936969
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 75  Q
    ||||||||| |||||||||| |||  ||||||||| || ||| |||||||||||||| |||||    
T  1937031 gatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcactatttct 1936969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 7398228 - 7398178
Alignment:
Q  15 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||| | |||||||||||||||||| |||| ||||||| |||||||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgtt 7398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 23197014 - 23197064
Alignment:
Q  15 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  15 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 60  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  15 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 60  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 12218278 - 12218323
Alignment:
Q  240 tgttgagagtttaatatcaccttgttcttaatgcta-gatgtagat 284  Q
    |||||||||||| |||||||||||||||||||| || |||||||||    
T  12218278 tgttgagagtttgatatcaccttgttcttaatgttaggatgtagat 12218323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 783851 - 783799
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||||||||||||||| |||||||||| | |  | |||||||||||||    
T  783851 ggatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgt 783799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 792955 - 792899
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    |||||||||||||||||||||||||| ||  | || ||||||| |||||| ||||||    
T  792955 gatgtttggattatgaaggagtatggtaaagaggaatcttggagtaaattattcact 792899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 1936797 - 1936761
Alignment:
Q  241 gttgagagtttaatatcaccttgttcttaatgctaga 277  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  1936797 gttgagagtttgatatcaccttgtttttaatgctaga 1936761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 2678450 - 2678394
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||| |||||||  | |||||||| ||||| || ||||||||||||||||||    
T  2678450 gatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcact 2678394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3746012 - 3746060
Alignment:
Q  17 tttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    |||||||||||||||| |||| |||  |||| |||||||||||||||||    
T  3746012 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 3746060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 7160805 - 7160752
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 6538844 - 6538888
Alignment:
Q  23 ttatgaaggagtatggaaataaagattcttggactaaattgttca 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 7156243 - 7156190
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttc 7156190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 7168738 - 7168688
Alignment:
Q  16 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 7174424 - 7174371
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||| |||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttc 7174371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 11237693 - 11237746
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    ||||||||| ||||| ||||||||||||||| |||  |||||||||||||||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttc 11237746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 33038160 - 33038211
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||||||||||||| |||||||| ||| | |||||||||| |||||    
T  33038160 gatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgt 33038211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 33020314 - 33020364
Alignment:
Q  14 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||| |||||||||||||| |||||||||||| | |||||||||| |||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgt 33020364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 7200029 - 7199976
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    ||||||||| |||||||||||| ||||||| || |||||||| ||| |||||||    
T  7200029 gatgtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttc 7199976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 33026656 - 33026708
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||| |||||||| | |||||||||||| | |||||||||| |||||    
T  33026656 ggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 33026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 34560969 - 34560917
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||||||  |||||||| || |||||||||||| | ||||||||||||||||    
T  34560969 ggatgtttcaattatgaaagaatatggaaataaaaaatcttggactaaattgt 34560917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 1078214 - 1078142
Alignment:
Q  10 aaggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcaggg 82  Q
    |||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||| | |||||| |||||    
T  1078214 aaggatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggg 1078142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  17 tttggattatgaaggagtatggaaataaagattcttggactaaattgttc 66  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 1421220 - 1421170
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 63  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 11081813 - 11081865
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 23766913 - 23766857
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23766857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 23816761 - 23816705
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 23769697 - 23769641
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 23819545 - 23819489
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23819489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 20292994 - 20293044
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  20292994 ggatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 2067110 - 2067074
Alignment:
Q  6 tatgaaggatgtttggattatgaaggagtatggaaat 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  2067110 tatgaaggatgtttggattatgaaggagtatggaaat 2067074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 20301442 - 20301492
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    ||||||||||||||||||||| |||| || |||||| ||||||||||||||    
T  20301442 ggatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 20305855 - 20305905
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    |||||| |||||||||||||| ||||||| |||||| ||||||||||||||    
T  20305855 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 20310259 - 20310309
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    |||||| |||||||||||||| ||||||| |||||| ||||||||||||||    
T  20310259 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 23732167 - 23732223
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    |||||||||||||||||||| ||||| |||||||  ||||||| |||| ||||||||    
T  23732167 gatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcact 23732223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 1427744 - 1427689
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcac 68  Q
    ||||||||| ||||||| ||||||||||||| ||| ||||||| |||| |||||||    
T  1427744 gatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcac 1427689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 11081925 - 11081955
Alignment:
Q  125 tatttgaggatgatcaagtgttgttgaagtt 155  Q
    |||||||||||||||||||||||||||||||    
T  11081925 tatttgaggatgatcaagtgttgttgaagtt 11081955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 1427508 - 1427464
Alignment:
Q  243 tgagagtttaatatcaccttgttcttaatgct-agatgtagatgt 286  Q
    ||||||||||||||||||||||||||| || | ||||||||||||    
T  1427508 tgagagtttaatatcaccttgttcttattgttaagatgtagatgt 1427464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 23861077 - 23861021
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    ||||||||||| |||||||| ||||| |  ||||  |||||||||||||||||||||    
T  23861077 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 23861021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 176345 - 176393
Alignment:
Q  24 tatgaaggagtatggaaataaagattcttggactaaattgttcactctt 72  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||    
T  176345 tatgaatgattatggaaataaagattcttggactaaattgttcactctt 176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 370833 - 370773
Alignment:
Q  16 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 76  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatttctt 370773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 1442149 - 1442103
Alignment:
Q  23 ttatgaaggagtatggaaataaagattcttggactaaattgttcact 69  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttcact 1442103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  14 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 7564798 - 7564748
Alignment:
Q  17 tttggattatgaaggagtatggaaataaagattcttggactaaattgttca 67  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttca 7564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1470975 - 1470922
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    |||| ||||| ||||||| || ||||||||||||||||||||| ||||||||||    
T  1470975 ggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 9819881 - 9819831
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    |||| ||||| |||||||||| |||||||||| ||| ||||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 19119065 - 19119115
Alignment:
Q  15 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 19126359 - 19126409
Alignment:
Q  15 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1459593 - 1459540
Alignment:
Q  12 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    |||| ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  1459593 ggatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 1459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  17 tttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    ||||| |||||||||| |||||||||| ||||| ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 4183052 - 4183000
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  4183052 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4183000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 4743896 - 4743844
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  4743896 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4743844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 17368366 - 17368418
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||||| | ||||| |||||||||||| |||  |||||||||||||||||    
T  17368366 gatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtt 17368418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 20016232 - 20016174
Alignment:
Q  17 tttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 75  Q
    ||||||| |||||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttct 20016174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 20019823 - 20019761
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 75  Q
    ||||||||| | |||||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  20019823 gatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttct 20019761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 22672175 - 22672115
Alignment:
Q  16 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 76  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||||| ||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttctt 22672115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 55419792 - 55419834
Alignment:
Q  23 ttatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  55419792 ttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 22671956 - 22671911
Alignment:
Q  241 gttgagagtttaatatcaccttgttcttaatgctag-atgtagatg 285  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  22671956 gttgagagtttaatatcaccttgttcttagtgctagtatgtagatg 22671911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 20019587 - 20019551
Alignment:
Q  240 tgttgagagtttaatatcaccttgttcttaatgctag 276  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  20019587 tgttgagagtttgatatcaccttgtttttaatgctag 20019551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 89147 - 89194
Alignment:
Q  17 tttggattatgaaggagtatggaaataaagattcttggactaaattgt 64  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 32380 - 32330
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 63  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| |||||||    
T  32380 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 51381502 - 51381452
Alignment:
Q  17 tttggattatgaaggagtatggaaataaagattcttggactaaattgttca 67  Q
    ||||||||||||| || ||||||||| |||| |||||||||||||||||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttca 51381452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 51858606 - 51858658
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||||||| |||||||| |||||||||  ||| |||||||||||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgtt 51858658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttgg 54  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 51782799 - 51782848
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 62  Q
    |||||||||||||||||||| ||||||||| || | ||||||| ||||||    
T  51782799 gatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 51756801 - 51756749
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  51756801 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 51756749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 51854947 - 51854999
Alignment:
Q  13 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 65  Q
    ||||||||||| ||||| || |||||||||  ||| |||||||||||||||||    
T  51854947 gatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgtt 51854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University