View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_22 (Length: 296)
Name: NF16588_high_22
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 40075179 - 40074913
Alignment:
| Q |
9 |
gaagaatatcaataagaactcattaccctgagaccacatgtttaactcttgtaaaatagatttgttgaactaaatttgtggtctatgaagtgctcatatc |
108 |
Q |
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| T |
40075179 |
gaagaatatcaataagaactcattaccctgagacgacaagtttaactcttgtaaaatagatttgttgaactaaatttgtggtctatgaagtgctcatatc |
40075080 |
T |
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| Q |
109 |
agtacctacagttgtgtaatgtcacatatcacaacatagttcatttgcttagatatctttaagtcacctagactagagatagttcaccagggaggcaggg |
208 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40075079 |
agaacctacagttgtgtaatgtcacatatcacaacatagttgatttgcttagatatctttaagtcacctagactagagatagttcaccagggaggcaggg |
40074980 |
T |
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| Q |
209 |
attaaagacagcctcctgaaatataacgggaaattttttcccaacgtatataaaagaatgtagggtt |
275 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40074979 |
attaaagacagcctcctgaaatataacgggagattttttcccaacgtatataaaagaatgtagggtt |
40074913 |
T |
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