View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_24 (Length: 286)
Name: NF16588_high_24
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 772033 - 772282
Alignment:
| Q |
16 |
aattttttctcagcagcagcctttgctttctccttggcagcaatcttagccttctcagcagcaacagccttagctttcttaaccctagcagcgcgaacag |
115 |
Q |
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| T |
772033 |
aattttttctcagcagcagcctttgctttctccttagcagcaatcttagccttctccgcagcaacagacttagctttcttaaccctagcagcgcgaacag |
772132 |
T |
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| Q |
116 |
cagacaaaaccaccttctcggcggaatccttatcgaagaaatcggtgctttccttagcgataaagtcgaataccttttcaagaaaagtggttgggtttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
772133 |
cagacaaaaccaccttctcggcggaatccttatcgaagaaattggtgctttccttagcgatgaagtcgaataccttttcaagaaaagtggttgggtttga |
772232 |
T |
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| Q |
216 |
aggatcaaaggtggaagagaagggaataggttttgaaggttttggttggg |
265 |
Q |
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| T |
772233 |
aggatcaaaggtggaagagaagggaataggttttgaaggttttggttggg |
772282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 28 - 263
Target Start/End: Complemental strand, 779504 - 779269
Alignment:
| Q |
28 |
gcagcagcctttgctttctccttggcagcaatcttagccttctcagcagcaacagccttagctttcttaaccctagcagcgcgaacagcagacaaaacca |
127 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| ||| | ||||| ||||||||||||||||||| |
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| T |
779504 |
gcagcagcctttgctttctcctgggaagcaatcttagccttctcagcagcaacagccttggctttcttcaccttcgcagcacgaacagcagacaaaacca |
779405 |
T |
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| Q |
128 |
ccttctcggcggaatccttatcgaagaaatcggtgctttccttagcgataaagtcgaataccttttcaagaaaagtggttgggtttgaaggatcaaaggt |
227 |
Q |
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| T |
779404 |
tcttctcagccgaatccttatcgaagaaatcagtactttccttagcgatgaagtcgaataccttttcaagaaaagcagttggttttgaaggatcaaaggt |
779305 |
T |
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| Q |
228 |
ggaagagaagggaataggttttgaaggttttggttg |
263 |
Q |
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|||||| |||||||||| ||| |||||||||||||| |
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| T |
779304 |
ggaagaaaagggaatagttttcgaaggttttggttg |
779269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 52 - 263
Target Start/End: Complemental strand, 783701 - 783490
Alignment:
| Q |
52 |
gcagcaatcttagccttctcagcagcaacagccttagctttcttaaccctagcagcgcgaacagcagacaaaaccaccttctcggcggaatccttatcga |
151 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||||| || ||||| ||||||| |
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| T |
783701 |
gcagcaatcttagctttctcggcagcaacagccttagctttctttaccttcacagcgcgaacagcggacaaaaccaccttctcagctgaatcattatcga |
783602 |
T |
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| Q |
152 |
agaaatcggtgctttccttagcgataaagtcgaataccttttcaagaaaagtggttgggtttgaaggatcaaaggtggaagagaagggaataggttttga |
251 |
Q |
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|||||||||| |||||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
783601 |
agaaatcggtactttccttagcgatgaagtcgaatacattttcgagaaaagcagttggatttgatggatcgaaggtggaagagaagggaataggttttga |
783502 |
T |
|
| Q |
252 |
aggttttggttg |
263 |
Q |
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||||||||||| |
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| T |
783501 |
gggttttggttg |
783490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 263
Target Start/End: Original strand, 24269310 - 24269489
Alignment:
| Q |
84 |
cttagctttcttaaccctagcagcgcgaacagcagacaaaaccaccttctcggcggaatccttatcgaagaaatcggtgctttccttagcgataaagtcg |
183 |
Q |
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|||||||||||| ||| | ||| || || ||| ||||||||||||||||| || ||||| |||||||||||| ||| |||||||||||||| |||||| |
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| T |
24269310 |
cttagctttctttaccttcacagtgcaaatagcggacaaaaccaccttctcagccgaatcattatcgaagaaactggtactttccttagcgatgaagtcg |
24269409 |
T |
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| Q |
184 |
aataccttttcaagaaaagtggttgggtttgaaggatcaaaggtggaagagaagggaataggttttgaaggttttggttg |
263 |
Q |
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||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
24269410 |
aatacatttttgagaaaagcggttggatttgatggatcaaaggtggaagagaagggaataggttttgaggattttggttg |
24269489 |
T |
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