View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_26 (Length: 281)
Name: NF16588_high_26
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 38666749 - 38667012
Alignment:
| Q |
1 |
aaatacttatgaaaaaatttaaagttaggaaaatatttaacgcatttgtttgcaaagtgtgcttaattactaacaagcaaacatggtttaaagtttatgg |
100 |
Q |
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| T |
38666749 |
aaatacttatgaaaaaatttaaagttaggaaaatattcaacgcatttgtttgcaaagtgtgcttaattactaacaagcaaacatcgtttaaagtttatgg |
38666848 |
T |
|
| Q |
101 |
ggttaagtagttcatctgatttgagttnnnnnnntaaagcgttgataaagttaaatgtgcaatatttaagttatggtaaggagnnnnnnnntactacatg |
200 |
Q |
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| T |
38666849 |
ggttaagtagttcatctgatttgagttaagaaaataaagcgttgataaagttaaatgtacaata--taagttatggtaaggaagaaaaaaatactacatg |
38666946 |
T |
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| Q |
201 |
acaattaacatattaatcgttgtcattnnnnnnnnngatcaaatatttgtaaaagaaatagtattat |
267 |
Q |
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| T |
38666947 |
acaattaacatattaatcgttgtcatt-aaaaaaaagatcaaatatttgtaaaagaaagagtattat |
38667012 |
T |
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