View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_3 (Length: 797)
Name: NF16588_high_3
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 692; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 19 - 783
Target Start/End: Original strand, 30958583 - 30959348
Alignment:
| Q |
19 |
gaggccaataccatcatgttttgatgatacttgcaaatggtcaggtaaggtattctattatttatttatacagcataaagactcgattgcttcttaccga |
118 |
Q |
| |
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| T |
30958583 |
gaggccaataccatcatgttttgatgatacttgcaaatggtcaggtaaggtattctattatttatttatacagcagaaagactcgattgcttcttaccga |
30958682 |
T |
|
| Q |
119 |
gttgtttctctctttaaatctaacggtatctactactggagtactatactgcaactgtagaaagatccaagttcggatgttggtggtagaactaatctta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30958683 |
gttgtttctctctttaaatctaacggtatctactactgcagtactatactgcaactgtagaaagatccaagttcggatgttggtggtagaactaatctta |
30958782 |
T |
|
| Q |
219 |
agaagttggtgcaggtaacaagaactcgacatggaaggcttagtccacaagagnnnnnnncaatggatgccattgttgaggccaggtgattattctcaat |
318 |
Q |
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| T |
30958783 |
agaagttggcgcaggtaacaagaactcgacatggaaggcttagtccacaagagagaaaaacaatggatgccattgttgaggccaggtgattattctcaat |
30958882 |
T |
|
| Q |
319 |
aataaatgttgtaactttacaaatatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattggttggtgttggaga |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30958883 |
aataaatgttgtaactttacaaacatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattggttggtgttggaga |
30958982 |
T |
|
| Q |
419 |
tggaccttgggacaagatgaaggagttttgtgacaatattccaacta-gggcctttgataattttcaggtagataatgaatattgatttaatacttgtta |
517 |
Q |
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| T |
30958983 |
tggaccttgggacaagatgaaggagttttgtgacaatattccaactaagggcctttgataattttcaggtagataatgaatattgatttaatacttgtta |
30959082 |
T |
|
| Q |
518 |
aatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcac |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30959083 |
aatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctcttacac |
30959182 |
T |
|
| Q |
618 |
gaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagtagcgcttggtctactagggtaagattatga |
717 |
Q |
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| T |
30959183 |
gaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagcagcgcttggtctactagggtaagattatga |
30959282 |
T |
|
| Q |
718 |
ttcattaccttcagtgttattctctattatttttcatattgaatnnnnnnngagtctcaagttcat |
783 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
30959283 |
ttcattaccttcagtgttattctctattatttttcatattgaataaaaaaagagtctcaagttcat |
30959348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 338 - 446
Target Start/End: Original strand, 30955067 - 30955172
Alignment:
| Q |
338 |
caaatatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatg |
437 |
Q |
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||||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |
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| T |
30955067 |
caaatatcttgtcttatttatctgcttaatttgt---cacagaaaatttcctctttcaatcatattggttggtgttggagatggaccttgggacatggtg |
30955163 |
T |
|
| Q |
438 |
aaggagttt |
446 |
Q |
| |
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||||||||| |
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| T |
30955164 |
aaggagttt |
30955172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 563 - 673
Target Start/End: Complemental strand, 11688939 - 11688829
Alignment:
| Q |
563 |
tctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatccctt |
662 |
Q |
| |
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||||||||||||||||||||| |||| || |||||||| || | ||| |||||||||||| ||||||||||| || | |||||| ||| |||| |||| |
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| T |
11688939 |
tctctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattcctt |
11688840 |
T |
|
| Q |
663 |
ctcagtataag |
673 |
Q |
| |
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||||||||||| |
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| T |
11688839 |
ctcagtataag |
11688829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 376 - 487
Target Start/End: Complemental strand, 11689147 - 11689036
Alignment:
| Q |
376 |
acagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttga |
475 |
Q |
| |
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||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| || ||| || ||||||||| || | ||||| || |
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| T |
11689147 |
acagtaagcttcctctttcaattatattggttggtgttggagatggaccatgggacatgatgaaagaatttgacgataatattccatctcgtgccttcga |
11689048 |
T |
|
| Q |
476 |
taattttcaggt |
487 |
Q |
| |
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|||||| ||||| |
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| T |
11689047 |
taatttccaggt |
11689036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 375 - 488
Target Start/End: Original strand, 7474121 - 7474234
Alignment:
| Q |
375 |
cacagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttg |
474 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | |||||||| | |
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| T |
7474121 |
cacagtaaatttcctctttcgatcatattggttggtgttggagatggaccttgggacatgatgaaggagtttgatgacaatatgccagccagggccttcg |
7474220 |
T |
|
| Q |
475 |
ataattttcaggta |
488 |
Q |
| |
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|||||||||||||| |
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| T |
7474221 |
ataattttcaggta |
7474234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 566 - 673
Target Start/End: Original strand, 7474336 - 7474443
Alignment:
| Q |
566 |
ctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctc |
665 |
Q |
| |
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|||||||||||||||||| ||||| | ||||| || |||||| ||| ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |
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| T |
7474336 |
ctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctc |
7474435 |
T |
|
| Q |
666 |
agtataag |
673 |
Q |
| |
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|||||||| |
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|
| T |
7474436 |
agtataag |
7474443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 44131152 - 44131205
Alignment:
| Q |
386 |
tcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaa |
439 |
Q |
| |
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|||||| ||||| || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
44131152 |
tcctctctcaattattttggttggagttggagatggaccatgggacgagatgaa |
44131205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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