View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_34 (Length: 246)
Name: NF16588_high_34
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 27570964 - 27570740
Alignment:
| Q |
11 |
cacagacgactatgaaccacgttttatatttttgcattttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaatt |
110 |
Q |
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| T |
27570964 |
cacaaacgactatgaaccacgttttatatttttgcattttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaatt |
27570865 |
T |
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| Q |
111 |
gacaatgcagctaatatacatctaccatttgaatatatatcagatttatgtgcaacttgtaaagcttgtgtaggacctaattgttagcagctaagagaca |
210 |
Q |
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| T |
27570864 |
gacaatgcagctaatatacatctaccatttgaatatatatcagatttatgtgcaacttgtaaagcttgtgtaggacctaattgttagcagctaagagaca |
27570765 |
T |
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| Q |
211 |
gtgttaggaggcaagaagataatga |
235 |
Q |
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| T |
27570764 |
gtgttaggaggcaagaagataatga |
27570740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 27419680 - 27419832
Alignment:
| Q |
42 |
ttgcattttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaattgacaatgcagctaatatacatctaccatttg |
141 |
Q |
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| T |
27419680 |
ttgcatttgggtatagataatccaattgtagacatgctttagacatctcacatgt---ttcttctaattgacattgcagcaaatatacatctaccaactg |
27419776 |
T |
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| Q |
142 |
aatatatatcagatttatgtgcaacttgtaaagcttgtgtaggacctaattgttagc |
198 |
Q |
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| T |
27419777 |
aatatatatcatatttatgtgaaacttat-aaggttgtgtaggacctgattgatagc |
27419832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 27425100 - 27425237
Alignment:
| Q |
46 |
attttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaattgacaatgcagctaatatacatctaccatttgaata |
145 |
Q |
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| T |
27425100 |
attttggtatagctaatgcaatggtagacatggtttagacatctcacat---ctttcttctaattgacaaggaaactaatatacatataccagct--aaa |
27425194 |
T |
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| Q |
146 |
tatatcagatttatgtgcaacttgtaaagcttgtgtaggacct |
188 |
Q |
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| T |
27425195 |
taaatcatatttatgtgccacttgtaaagcttgcgtaggacct |
27425237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 27422579 - 27422641
Alignment:
| Q |
119 |
agctaatatacatctaccatttgaatatatatcagatttatgtgcaacttgtaaagcttgtgt |
181 |
Q |
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| T |
27422579 |
agctaatatacatctaccagctaaatacatctcagatttgtgtgcaacttgttaggcttgtgt |
27422641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 27412020 - 27412061
Alignment:
| Q |
53 |
tataactaatccaatggtagacatgctctcgacatctcacat |
94 |
Q |
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| T |
27412020 |
tatagctaatccaatggtagacatgctttagacatctcacat |
27412061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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