View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16588_high_36 (Length: 238)
Name: NF16588_high_36
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17596681 - 17596901
Alignment:
| Q |
1 |
ctagttgcacaaatggaccaacaagaacagcaacttagtacagtatcacaaaccctagaccaatcatcagaaacaaataattactcatctaaccatatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17596681 |
ctagttgcacaaatggaccaacaagaacagcaacttagtacagtatcacaaaccctagaccaatcatcagaaacaaataattactcatctaaccatatca |
17596780 |
T |
|
| Q |
101 |
ctaatgtttttgaagaatatgcatccaacaatgctaacactcatgtggaaaatcttgttgctatgtcatcattttcgacgattcataaagacatatacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17596781 |
ctaatgtttttgaagaatatgcatccaacaatgctaacactcatgtggaaaatcttgttgctatgtcatcattttcgacgattcataaagacatatacaa |
17596880 |
T |
|
| Q |
201 |
tttagcgttggagaaacaagc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
17596881 |
tttagcgttggagaaacaagc |
17596901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University