View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_37 (Length: 238)
Name: NF16588_high_37
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_37 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 30801995 - 30801775
Alignment:
| Q |
18 |
cagggaatgtgaaaatcccattcagtaatagcatcccagtgattgatctaagtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaa |
117 |
Q |
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| T |
30801995 |
cagggaatgtgaaaatcccattcagtaatagcatcccagtgattgatctaagtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaa |
30801896 |
T |
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| Q |
118 |
agctgctgaggagtttggattctttcaggttcatccagttcatgccatttatttttcttgcttttaatttaatacannnnnnnnngtttggttcttcgtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30801895 |
agctgctgaggagtttggattctttcaggttcatctagttcgtgccatttatttttcttgcttttaatttaatacatttttttttgtttggttcttcgtt |
30801796 |
T |
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| Q |
218 |
ggtcgaatgtattcagaagtt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
30801795 |
ggtcgaatgtattcagaagtt |
30801775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 30809390 - 30809270
Alignment:
| Q |
29 |
aaaatcccattcagtaatagcatcccagtgattgatctaagtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaaagctgctgagg |
128 |
Q |
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||||||||||||| || |||||| |||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||| ||||||||| |||||| |
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| T |
30809390 |
aaaatcccattcaatagtagcattccagtgattgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgagg |
30809291 |
T |
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| Q |
129 |
agtttggattctttcaggttc |
149 |
Q |
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| T |
30809290 |
agtttggattctttcaggttc |
30809270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 30797607 - 30797484
Alignment:
| Q |
69 |
gtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaaagctgctgaggagtttggattctttcaggttcatccagttcatgccattta |
168 |
Q |
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| T |
30797607 |
gtgaagcacataagggtgatagaaccaaaataattcaaaaaattattaaagctgctcagaagtttggattctttaaggttcatatagttcatgccattta |
30797508 |
T |
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| Q |
169 |
tttttcttgcttttaatttaataca |
193 |
Q |
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| T |
30797507 |
-ttttcttgtttttaattcaataca |
30797484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 30750676 - 30750547
Alignment:
| Q |
18 |
cagggaatgtgaaaatcccattcagtaatagcatcccagtgattgatctaagtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaa |
117 |
Q |
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| T |
30750676 |
cagggaatttcaaaatcccaatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaa |
30750577 |
T |
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| Q |
118 |
agctgctgaggagtttggattctttcaggt |
147 |
Q |
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| T |
30750576 |
ggctgctgaggagtttggattctttcaggt |
30750547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 30752487 - 30752358
Alignment:
| Q |
18 |
cagggaatgtgaaaatcccattcagtaatagcatcccagtgattgatctaagtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaa |
117 |
Q |
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| T |
30752487 |
cagggaatttcaaaatcccaatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaa |
30752388 |
T |
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| Q |
118 |
agctgctgaggagtttggattctttcaggt |
147 |
Q |
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| T |
30752387 |
ggctgctgaggagtttggattctttcaggt |
30752358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 30742093 - 30742050
Alignment:
| Q |
108 |
aaattatcaaagctgctgaggagtttggattctttcaggttcat |
151 |
Q |
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| T |
30742093 |
aaattatcaaggctgctcaggagtttggattctttcaggttcat |
30742050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 30762731 - 30762692
Alignment:
| Q |
108 |
aaattatcaaagctgctgaggagtttggattctttcaggt |
147 |
Q |
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| T |
30762731 |
aaattatcaaggcttctgaggagtttggattctttcaggt |
30762692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 30795504 - 30795443
Alignment:
| Q |
84 |
gtgatagaagcaatataatcaagaaaattatcaaagctgctgaggagtttggattctttcag |
145 |
Q |
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||||||||| ||||||||| | ||| |||| ||||||||| |||||||| ||||||||||| |
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| T |
30795504 |
gtgatagaaccaatataattcaaaaagttattaaagctgctcaggagttttgattctttcag |
30795443 |
T |
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