View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_high_4 (Length: 519)
Name: NF16588_high_4
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 193 - 501
Target Start/End: Complemental strand, 33116712 - 33116406
Alignment:
| Q |
193 |
atggggtcgccaaggtagctagcatcaatacattgagaatgatgctattttggatttatttttatattgcaataacaagggatagctacgttggagaagc |
292 |
Q |
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| T |
33116712 |
atggggtcgccaaggtagctagcatcaa--cattgagaatgatgctattttggatttatttttatattgcaataacaagggatagctacgttggagaagc |
33116615 |
T |
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| Q |
293 |
aataagagttatggttgcgccatgaccaccaaatacttgcaaaaaatgtgttggagttgattgagcttagtctttgcttgaatcaaatttaataccacta |
392 |
Q |
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| T |
33116614 |
aataagagttacggttgcgccatgaccaccaaatacttgcaaaaaatgtgttggagttgattgagcttagtctttgcttgaatcaaatttaataccacta |
33116515 |
T |
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| Q |
393 |
ttaatttaacttttcttaagttttttattcaacgaaatttatttagaacgaattaagagtttgtaattatgctttgacaatttgatgaggctaggcaaca |
492 |
Q |
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| T |
33116514 |
ttaatttaacttttcttaagttttttattcaacgaaatttatttagaacgaattaagagtttgtaattatgctttgacaatttaatgaggctaggcaaca |
33116415 |
T |
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| Q |
493 |
tgtgtaata |
501 |
Q |
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| T |
33116414 |
tgtgtaata |
33116406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33116948 - 33116769
Alignment:
| Q |
1 |
aaagagcagttacatcataaatatttcatgtcttatttgtttgaccttatcttgtttataagagtttacattcatatttcctatattgtccttttcaact |
100 |
Q |
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| T |
33116948 |
aaagagcagttacatcgtacatatttcatgtcttatttctttgaccttatcttgtttataagagttcacattcatatttcctatattgtccttttcaact |
33116849 |
T |
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| Q |
101 |
ctttgactcgttacataaaacaaacatgctgaaatgatggaaaatgctaatatggttacatgaaaccaaagaatcctgtg |
180 |
Q |
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| T |
33116848 |
ctttgactcgttacataaaacaaacatgctgaaatgttggaaaatgctaatattgttacatgaaaccaaagaatcctgtg |
33116769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 6302613 - 6302521
Alignment:
| Q |
24 |
tttcatgtcttatttgtttgaccttatcttgtttataagagtttacattcatatttcctatattgtccttttcaactctttgactcgttacat |
116 |
Q |
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| T |
6302613 |
tttcatgtcttattttcttggtcttctcttatttataagagttcacattcatattttctatattgcccttttaagctctttgactcattacat |
6302521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 2146210 - 2146118
Alignment:
| Q |
24 |
tttcatgtcttatttgtttgaccttatcttgtttataagagtttacattcatatttcctatattgtccttttcaactctttgactcgttacat |
116 |
Q |
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| T |
2146210 |
tttcatgttttatttcctttgccttatcttatttataagcgttcacattcatatttcaaatattgctcctttaaactctttgactcattacat |
2146118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 25410767 - 25410874
Alignment:
| Q |
2 |
aagagcagttacatcataaatatttcatgtcttatttgtttgaccttatcttgtttataagagtttacattcatatttcctatattgtccttttcaactc |
101 |
Q |
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||||| |||||||||| | ||||||||||| |||||| |||| ||| |||| |||||||| | ||||||| |||||||| |||||||||||||| ||| |
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| T |
25410767 |
aagagaagttacatcacacatatttcatgttttatttccttgatcttctcttatttataaggatctacattcctatttcctctattgtccttttcatctc |
25410866 |
T |
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| Q |
102 |
tttgactc |
109 |
Q |
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||| |||| |
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| T |
25410867 |
tttaactc |
25410874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 43453163 - 43453216
Alignment:
| Q |
50 |
tcttgtttataagagtttacattcatatttcctatattgtccttttcaactctt |
103 |
Q |
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|||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
43453163 |
tcttatttataagagttcacattcacatttcctatattgtcctttttaactctt |
43453216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 42624072 - 42624006
Alignment:
| Q |
50 |
tcttgtttataagagtttacattcatatttcctatattgtccttttcaactctttgactcgttacat |
116 |
Q |
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| T |
42624072 |
tcttatttataagagtccacattcacatttcctataatgctcctttcaactctttgactcattacat |
42624006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 20290691 - 20290779
Alignment:
| Q |
27 |
catgtcttatttgtttgaccttatcttgtttataagagtttacattcatatttcctatattgtccttttcaactctttgactcgttaca |
115 |
Q |
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| T |
20290691 |
catgtcttatttgcttggctttctcttatttataagggtccatattcatatttaccatattatccttttcagccctttgactcattaca |
20290779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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