View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16588_high_7 (Length: 477)
Name: NF16588_high_7
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 12889012 - 12888783
Alignment:
| Q |
12 |
cacagacacacagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctggattggacaggctttt |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12889012 |
cacagatacacagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctggattggacaggct-tt |
12888914 |
T |
|
| Q |
112 |
ttctgcattttcgtattttctacacgtcacatgatgcctagaaagacttgtcaaactcaaatctaata---tttggtttggtgtac-ttctattttaact |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
12888913 |
ttctgcattttcgtattttctacatgtcacatgatgcctagaaagacttgtcaaactcaaatctaatatcttttggtttggtgtactttctattctaact |
12888814 |
T |
|
| Q |
208 |
tcttcaagttcgaccacagaagcaaagctaa |
238 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |
|
|
| T |
12888813 |
tcttcaagttctaccacataagcaaagctaa |
12888783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 361 - 461
Target Start/End: Complemental strand, 12888660 - 12888560
Alignment:
| Q |
361 |
ttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcattattattat |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12888660 |
ttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcattattattat |
12888561 |
T |
|
| Q |
461 |
t |
461 |
Q |
| |
|
| |
|
|
| T |
12888560 |
t |
12888560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 366 - 452
Target Start/End: Complemental strand, 12904868 - 12904782
Alignment:
| Q |
366 |
tatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt |
452 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12904868 |
tatggacgtgggagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt |
12904782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 12891352 - 12891277
Alignment:
| Q |
22 |
cagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctgga |
97 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
12891352 |
cagttatgcttgttaaggcaataacttgtattaaaaccggttcattcaagggatcctttcaaaataaagagctgga |
12891277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 451
Target Start/End: Original strand, 12876531 - 12876622
Alignment:
| Q |
360 |
gttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcat |
451 |
Q |
| |
|
||||||||||| ||||||||||| ||| | ||||||||||| || | |||| |||||| |||| ||||||||||||| || || |||||||| |
|
|
| T |
12876531 |
gttcactatggccgtggaagtgatgctaagggaatgcatttctaccgaactattcaacttcgtgagttgcaagatcaagagctagtaagcat |
12876622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 12924965 - 12924903
Alignment:
| Q |
390 |
ggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt |
452 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||||||| |||| |||||||||||| |
|
|
| T |
12924965 |
ggaatgcatttttatctaaccattcaacttcgtgagttgcaagatgatgaacttgtaagcatt |
12924903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 12929873 - 12929833
Alignment:
| Q |
367 |
atgggcgtggaagtgaagctcatggaatgcatttttatcta |
407 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
12929873 |
atgggcgtggcagtgaagatcatggaatgcatttttatcta |
12929833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 21113932 - 21114023
Alignment:
| Q |
359 |
tgttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagca |
450 |
Q |
| |
|
||||||| |||||||||| ||||||||| | ||||||||||| ||||||||| ||||| || ||| |||| ||||| ||||||||||||| |
|
|
| T |
21113932 |
tgttcacaatgggcgtgggagtgaagctaagggaatgcatttctatctaactattcaatttctccagatgcatgatcaagaccttgtaagca |
21114023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University