View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16588_high_9 (Length: 390)

Name: NF16588_high_9
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16588_high_9
NF16588_high_9
[»] chr2 (17 HSPs)
chr2 (1-376)||(39192106-39192484)
chr2 (1-376)||(39197788-39198164)
chr2 (38-376)||(39161920-39162256)
chr2 (38-376)||(39206938-39207274)
chr2 (49-376)||(39388763-39389091)
chr2 (1-162)||(39222884-39223045)
chr2 (159-292)||(39223101-39223234)
chr2 (49-281)||(39215721-39215950)
chr2 (71-280)||(39370240-39370451)
chr2 (62-258)||(39381235-39381431)
chr2 (66-162)||(39421652-39421748)
chr2 (1-46)||(39161841-39161886)
chr2 (1-46)||(39207308-39207353)
chr2 (1-53)||(39389129-39389181)
chr2 (184-235)||(39426307-39426358)
chr2 (1-45)||(39459251-39459295)
chr2 (66-106)||(39473285-39473325)
[»] chr5 (1 HSPs)
chr5 (65-370)||(33561119-33561427)
[»] chr8 (1 HSPs)
chr8 (68-286)||(45342158-45342378)
[»] chr7 (1 HSPs)
chr7 (66-175)||(19807947-19808057)
[»] chr6 (1 HSPs)
chr6 (63-134)||(16113423-16113494)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 39192484 - 39192106
Alignment:
Q  1 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39192484 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttat 39192385  T
Q  101 tcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatat-ttttataacctgatctacttaattctttaaaaacatttttaa 199  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  39192384 tcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattctttaaaaacatttttaa 39192285  T
Q  200 tcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagac--tgtcaaactaatttcgattatcttgtcacc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  39192284 tcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagactgtgtcaaactaatttcgattatcttgtcacc 39192185  T
Q  298 cttgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaatgtttgattataatattat 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  39192184 cttgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaaggttttattgtaatattat 39192106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 39198164 - 39197788
Alignment:
Q  1 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39198164 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttat 39198065  T
Q  101 tcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ataacctgatctacttaattctttaaaaacatttttaa 199  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  39198064 tcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattctttaaaaacatttttaa 39197965  T
Q  200 tcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagactgtcaaactaatttcgattatcttgtcaccct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39197964 tcatgttaatgttctatgtattagtcaatttgaaaagattttcccgttttcatttcacatccacagactgtcaaactaatttcgattatcttgtcaccct 39197865  T
Q  300 tgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaatgtttgattataatattat 376  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  39197864 tgaacattatatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaagtttttattataatattat 39197788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 38 - 376
Target Start/End: Original strand, 39161920 - 39162256
Alignment:
Q  38 aaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactatt 137  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||   ||||||||||||||| |||  |||| ||    
T  39161920 aaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgtt 39162019  T
Q  138 cctcttaatgatgatgatatttttataa-cctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaag 236  Q
    ||| ||||||||||||||||||||  || |||||||||||||||| |||||| || |||||| ||||||||||||| ||||| |||||| ||||||||||    
T  39162020 ccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaag 39162118  T
Q  237 attttccagttttcatatcacatccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctg 336  Q
     |||||||| ||||||||||||  | |||||| |||||| ||| |  ||||| || | |||||||||| ||  ||||||||||||||||||||| |||      
T  39162119 cttttccagatttcatatcaca--cccagactttcaaacaaatctgaattatatttttacccttgaactttttatgtatctcttaagtgaaaaacctcat 39162216  T
Q  337 gtgttttttatacattgctaatgtttgattataatattat 376  Q
    ||||||||||| ||| ||||  |||| |||||||||||||    
T  39162217 gtgttttttatccatggctatagttttattataatattat 39162256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 39207274 - 39206938
Alignment:
Q  38 aaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactatt 137  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||   ||||||||||||||| |||  |||| ||    
T  39207274 aaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgtt 39207175  T
Q  138 cctcttaatgatgatgatatttttataa-cctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaag 236  Q
    ||| ||||||||||||||||||||  || |||||||||||||||| |||||| || |||||| ||||||||||||| ||||| |||||| ||||||||||    
T  39207174 ccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaag 39207076  T
Q  237 attttccagttttcatatcacatccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctg 336  Q
     |||||||| ||||||||||||  | |||||| |||||| ||| |  ||||| || | |||||||||| ||  ||||||||||||||||||||| |||      
T  39207075 cttttccagatttcatatcaca--cccagactttcaaacaaatctgaattatatttttacccttgaactttttatgtatctcttaagtgaaaaacctcat 39206978  T
Q  337 gtgttttttatacattgctaatgtttgattataatattat 376  Q
    ||||||||||| ||| ||||  |||| |||||||||||||    
T  39206977 gtgttttttatccatggctatagttttattataatattat 39206938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 49 - 376
Target Start/End: Complemental strand, 39389091 - 39388763
Alignment:
Q  49 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatga 148  Q
    |||||||||||| ||| |||||| |||||||||||| ||||||||| ||||||||||   ||||||||||||||||  || ||||| |||||||||||||    
T  39389091 gtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatga 39388992  T
Q  149 tgatgatat---ttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccag 245  Q
    |||||||||   ||||||| | |||||||||||||||  || |||| |||||||||||||||||||| |||||  |||||||||||||| | ||||||||    
T  39388991 tgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtcatagtcaatttgaaatgcttttccag 39388892  T
Q  246 ttttcatatcacatccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctggtgtttttt 345  Q
     |||||||||||| ||| ||||| || |||||||||  | ||| |  |||||||||||||||  |||||||||||| ||||||||||||  || ||||||    
T  39388891 atttcatatcacacccaaagactttcgaactaatttgcaatatatcctcacccttgaacattttatgtatctcttaggtgaaaaaactc--gtatttttt 39388794  T
Q  346 atacattgctaatgtttgattataatattat 376  Q
    || ||| ||||| |||| | |||||||||||    
T  39388793 atccatggctaaggttttactataatattat 39388763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 39222884 - 39223045
Alignment:
Q  1 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttat 100  Q
    ||||||||| |||||||||  ||||||||||| |||||||||||||| |||||||||||| ||||||||||  ||||||||||| ||||||||| |||||    
T  39222884 gctcaacttcaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttat 39222983  T
Q  101 tcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttta 162  Q
    ||||||| |||||||||| |||||| || ||||| |||||||||||||||||||||||||||    
T  39222984 tcatcttgtttattgaaaaaatttctttacaactgttcctcttaatgatgatgatattttta 39223045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 39223101 - 39223234
Alignment:
Q  159 tttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcaca 258  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||| |||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 39223200  T
Q  259 tccacagactgtcaaactaatttcgattatcttg 292  Q
    |||||| |||||||||||||||| ||||||||||    
T  39223201 tccacaaactgtcaaactaatttggattatcttg 39223234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 281
Target Start/End: Original strand, 39215721 - 39215950
Alignment:
Q  49 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatga 148  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||||||| ||||| | ||||  |||||||||||||    
T  39215721 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 39215817  T
Q  149 tgatgata-tttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagtt 247  Q
    |||||| | ||||||||||| ||||||| || || |||||||| ||||||||||||||||||||| ||||| || ||||  ||| |||  ||||| ||||    
T  39215818 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattg-aaattttttctagtt 39215916  T
Q  248 ttcatatcacatccacagactgtcaaactaattt 281  Q
    ||||||||||| ||||| | |||||||| |||||    
T  39215917 ttcatatcacacccacacattgtcaaacaaattt 39215950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 280
Target Start/End: Original strand, 39370240 - 39370451
Alignment:
Q  71 gaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgata----tttttataac 166  Q
    ||||||||||| |  ||||||||| |||||||||||  ||||||||   |||||||||  || | |||| |||||||||||||||     ||||||||||    
T  39370240 gaggaaaaagatttgggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataac 39370339  T
Q  167 ctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacaga 266  Q
    | ||||||  || |||| |||||||||| ||||||||||||||||| ||||| || |||||||| ||||| ||||||| ||| ||||||||| ||||  |    
T  39370340 ccgatctatatagttctataaaaacattcttaatcatgttaatgttgtatgtcttggtcaatttaaaaagcttttccaatttacatatcacacccac--a 39370437  T
Q  267 ctgtcaaactaatt 280  Q
    | ||||||||||||    
T  39370438 cagtcaaactaatt 39370451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 39381431 - 39381235
Alignment:
Q  62 tatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt 161  Q
    |||||||| |||||  ||||||| ||||||||| ||||||||| |  |||| ||||||||||||||| ||  | || || ||||||||| ||||| ||||    
T  39381431 tatattgacgaggagcaagaatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatactttt 39381332  T
Q  162 a-taacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcaca 258  Q
    | |||| |||||||| |||||| ||||||| |||||||||| |||||||||| ||||  || ||| | |||||||| || |||||||||  |||||||    
T  39381331 attaacttgatctacataattcattaaaaatatttttaatcgtgttaatgttgtatg-cttggtcgacttgaaaagcttctccagtttttgtatcaca 39381235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 39421748 - 39421652
Alignment:
Q  66 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttta 162  Q
    ||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||| ||||||| ||||| || ||   ||||||| |||||||||||    
T  39421748 ttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattgaaagagtttcatttcaactgtttcttacaatgatgttgatattttta 39421652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39161841 - 39161886
Alignment:
Q  1 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 46  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  39161841 gctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcct 39161886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39207353 - 39207308
Alignment:
Q  1 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 46  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  39207353 gctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcct 39207308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39389181 - 39389129
Alignment:
Q  1 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaa 53  Q
    |||||||||||||||||||||||||||||| | |||||| ||||||| |||||    
T  39389181 gctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaa 39389129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 39426358 - 39426307
Alignment:
Q  184 ttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaa 235  Q
    |||||||||| ||||||||||||||| || ||||| |||||||| |||||||    
T  39426358 ttaaaaacatgtttaatcatgttaatcttgtatgtcttagtcaacttgaaaa 39426307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39459251 - 39459295
Alignment:
Q  1 gctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcc 45  Q
    |||||| |||||||| ||||| |||||||||| ||||||||||||    
T  39459251 gctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 39473325 - 39473285
Alignment:
Q  66 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatct 106  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  39473325 ttgatgaggaaatagaatcgggtaaatgttcttattcatct 39473285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 65 - 370
Target Start/End: Original strand, 33561119 - 33561427
Alignment:
Q  65 attgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgat-attttt-- 161  Q
    |||||| ||||||||||||| ||||||||| ||| |||||||  |||||||||||||||| |||  || | ||||||| | |||||||||| ||||||      
T  33561119 attgataaggaaaaagaatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttg 33561218  T
Q  162 --ataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttc-tatgtattagtcaatttgaaaagattttccagttttcatatcaca 258  Q
      ||| ||||||||||||||| ||||||| |||||||||||||||||||||||  ||||| || |||||||||||||| |||| | | ||||||||||||    
T  33561219 ttatatcctgatctacttaatcctttaaacacatttttaatcatgttaatgtttgtatgtcttggtcaatttgaaaagcttttactgatttcatatcaca 33561318  T
Q  259 tccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaat 358  Q
     ||||||||| ||| |||||| | |||||| || |||||||||||||||  |||||||||||||||||||||  ||| ||| ||||||| ||| |||||     
T  33561319 cccacagactttcagactaatctggattatattttcacccttgaacattttatgtatctcttaagtgaaaaa--tctcgtg-tttttatccatggctaag 33561415  T
Q  359 gtttgattataa 370  Q
    |||| |||||||    
T  33561416 gttttattataa 33561427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 68 - 286
Target Start/End: Original strand, 45342158 - 45342378
Alignment:
Q  68 gatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ataac 166  Q
    ||||||||||||||||  ||||||  |  ||||||||||  |||||||||||||||||||| |||||||| || ||  ||||| |||||||||| |||||    
T  45342158 gatgaggaaaaagaatttggtaaaatttgttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataac 45342257  T
Q  167 ctgatctacttaattctttaaaa---acatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccac 263  Q
    ||||||||| || |  |||||||   | || |||||| ||||||||||  ||| | |||||||| |||||||| || ||||||||| ||||  |   |||    
T  45342258 ctgatctacatattcttttaaaaaatatatgtttaatgatgttaatgtagtatatcttagtcaagttgaaaagcttgtccagtttttatatttc--tcac 45342355  T
Q  264 agactgtcaaactaatttcgatt 286  Q
    | |||||||||||||||| ||||    
T  45342356 acactgtcaaactaatttggatt 45342378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 19807947 - 19808057
Alignment:
Q  66 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ata 164  Q
    ||||||||||||||| ||| |||||| || |||||||||||  ||||| ||| || ||||||| || || || || || |||||| |||||||||| |||    
T  19807947 ttgatgaggaaaaagcatcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaata 19808046  T
Q  165 acctgatctac 175  Q
    |||||||||||    
T  19808047 acctgatctac 19808057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 16113423 - 16113494
Alignment:
Q  63 atattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaact 134  Q
    ||||||| |||||||||||||| ||||| ||| || ||||||||  |||||||||| || |||||| |||||    
T  16113423 atattgacgaggaaaaagaatcgggtaagtgttctcattcatctagtttattgaaaaaaattcatttcaact 16113494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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