View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_15 (Length: 358)
Name: NF16588_low_15
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 37285342 - 37285664
Alignment:
| Q |
18 |
atgaacctatgctgaatttaacaattaatctaaaagtatatatagttgagatgctcacagtgagagggaccaaagcaacagagtaaataggcaacttgat |
117 |
Q |
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| T |
37285342 |
atgaacctatgctgaatttaacaattaatctaaaagtatatatagttgagatgctcacagtgagagggaccaaagcaacagagtaaataggcaacttgat |
37285441 |
T |
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| Q |
118 |
agccctccaaatcaatgtttccattgaaatatcctcttgaatttcctctccaacatatttttcaatgctggaactagaagaagaggataattcagctcct |
217 |
Q |
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| T |
37285442 |
agccctccaaatcaatgtttccattgaaatatcctcttgaatttcctctccaacatttttttcaatgctggaactagaagaagaggataattcagctcct |
37285541 |
T |
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| Q |
218 |
ccagcataacgcacatgtatgtagtgatgatcccttctttgaacttgaaatctcctatgtaaaactttttccatactggtattacattttgatcttttgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37285542 |
ccagcataacgcacatgtatgtagtgatgatcccttctttgaacttgaaatctcctatgtaaaactttttccatactggtattacattttgatcttttgg |
37285641 |
T |
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| Q |
318 |
aaactaaatggtacctgaaaatt |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
37285642 |
aaactaaatggtacctgaaaatt |
37285664 |
T |
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