View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_16 (Length: 356)
Name: NF16588_low_16
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_16 |
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| [»] scaffold1683 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 126 - 342
Target Start/End: Complemental strand, 39874491 - 39874268
Alignment:
| Q |
126 |
aataaaatgtatggaaagtcgtttgtg-------tgttgaataatataaacagctcgtttttagcatgtaaagtttagactcttttaatgtcaccgttaa |
218 |
Q |
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| T |
39874491 |
aataaaatgtatggaaagtcgtttgtgaactcagtgttgaataatataaacagctcgtttctagcatgtaaagcttagactcttttaatgtcaccgttaa |
39874392 |
T |
|
| Q |
219 |
taaaatagactttgttaccatcttaaaatttagacattaaagctaacaaaaccttaaaagttagtccaagaggtgaggattaaaggctagacaatgtgaa |
318 |
Q |
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| T |
39874391 |
taaaatagactttgttaccatcttaaaatttagacattaaagctagcaaaaccttaaaagttagtccaagaggtgaggattaaaggccggacaatgtgaa |
39874292 |
T |
|
| Q |
319 |
tctccacataatttcgttgctatc |
342 |
Q |
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||| |||||||||||||||||||| |
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| T |
39874291 |
tcttcacataatttcgttgctatc |
39874268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 152 - 336
Target Start/End: Complemental strand, 39897444 - 39897261
Alignment:
| Q |
152 |
gtgttgaataatataaacagctcgtttttagcatgtaaagtttagactcttttaatgtcaccgttaataaaatagactttgttaccatcttaaaatttag |
251 |
Q |
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| T |
39897444 |
gtgttgaataatacaaatgactcatttgttgcatgtaaagcttaaactcttataatgtccccgttaataaaatagactctgataccatcttaaaatttag |
39897345 |
T |
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| Q |
252 |
acattaaagctaacaaaaccttaaaagttagtccaagaggtgaggattaaaggctagacaatgtgaatctccaca-taatttcgtt |
336 |
Q |
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| T |
39897344 |
actttaaagttagctaaacct--caagttagttcaagaggtgaggattaaagtctagactatatgaatctccacagtaatttcgtt |
39897261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 40096608 - 40096734
Alignment:
| Q |
218 |
ataaaatagactttgttaccatcttaaaatttagacattaaagctaacaaaaccttaaaagttagtccaagaggtgaggattaaaggctagacaatgtga |
317 |
Q |
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| T |
40096608 |
ataaaatagactctaataccatcttaaattttagactttcaaactagctaaacctcaaaagttagtccaagacatgaggattaaagtctagacaatgtga |
40096707 |
T |
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| Q |
318 |
atctccaca-taatttcgttgctatct |
343 |
Q |
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| T |
40096708 |
atctccacagtaattttgttgctatct |
40096734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 76 - 325
Target Start/End: Complemental strand, 39882561 - 39882296
Alignment:
| Q |
76 |
taataatgttatcatacagttctaatttgttttcttcaagagttcccgttaataaaatgtatggaaagtcgtttgtg-------tgttgaataatataaa |
168 |
Q |
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| T |
39882561 |
taataatatcatcatacaattttgatttgttttcttttagtgttccggttaataaaatgtatggacaatcatttgcgaactcagtgttgaataattcaaa |
39882462 |
T |
|
| Q |
169 |
cagctcgtttttagcatgtaaagtttagactcttttaatgtcaccgttaata------aa---atagactttgttaccatcttaaaatttagacattaaa |
259 |
Q |
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| T |
39882461 |
ctgctcatttgtggcatgtaaagcttagactcttttaatgtttccgttaatatcttttaatgtatagaactatatactatcttaaaatttagactttaaa |
39882362 |
T |
|
| Q |
260 |
gctaacaaaaccttaaaagttagtccaagaggtgaggattaaaggctagacaatgtgaatctccac |
325 |
Q |
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|||| | |||||| |||||||||| |||||||||| | | ||| |||||||||||||||||||| |
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| T |
39882361 |
gctagctaaacctcaaaagttagttgaagaggtgagtactcaagtgtagacaatgtgaatctccac |
39882296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 39890080 - 39889929
Alignment:
| Q |
76 |
taataatgttatcatacagttctaatttgttttcttcaagagttcccgttaataaaatgtatggaaagtcgtttgtg-------tgttgaataatataaa |
168 |
Q |
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||||||||| ||||||||||| | ||||||||||| | |||| | ||||||||||||||||| | ||||||||| |||||||||||| ||| |
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| T |
39890080 |
taataatgtcatcatacagttttgatttgttttctcttggtgttctcattaataaaatgtatggacaatcgtttgtgaactcagtgttgaataatacaaa |
39889981 |
T |
|
| Q |
169 |
cagctcgtttttagcatgtaaagtttagactcttttaatgtcaccgttaata |
220 |
Q |
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| T |
39889980 |
atgctcatttgtggcatgtaaagtttagactcttttaatgtttccgttaata |
39889929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 39897567 - 39897480
Alignment:
| Q |
53 |
aatgttacatcgcttattacgtgtaataatgttatcatacagttctaatttgttttcttcaagagttcccgttaataaaatgtatgga |
140 |
Q |
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| T |
39897567 |
aatgttatatcatttattacctgtaatagtgtaatcatacagttctggtttgttttctcttagcgtttccgttaataaaatgtatgga |
39897480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 39889485 - 39889437
Alignment:
| Q |
274 |
aaaagttagtccaagaggtgaggattaaaggctagacaatgtgaatctc |
322 |
Q |
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| T |
39889485 |
aaaagttagtccgagaggtgaggattaaagtctagacaaagtaaatctc |
39889437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 544 - 590
Alignment:
| Q |
274 |
aaaagttagtccaagaggtgaggattaaaggctagacaatgtgaatc |
320 |
Q |
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||||||||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
544 |
aaaagttagtctgagaggtgaggattaaagtctagacaaagtgaatc |
590 |
T |
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