View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16588_low_17 (Length: 354)

Name: NF16588_low_17
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16588_low_17
NF16588_low_17
[»] chr5 (9 HSPs)
chr5 (54-232)||(35779270-35779452)
chr5 (278-342)||(35779504-35779568)
chr5 (130-201)||(9049390-9049461)
chr5 (130-201)||(13239800-13239871)
chr5 (140-202)||(16137074-16137137)
chr5 (123-174)||(28277528-28277579)
chr5 (130-201)||(28278365-28278436)
chr5 (148-201)||(16135490-16135544)
chr5 (130-184)||(42310000-42310054)
[»] chr2 (5 HSPs)
chr2 (128-176)||(4561135-4561183)
chr2 (130-201)||(24398106-24398178)
chr2 (130-201)||(45726978-45727049)
chr2 (140-201)||(5723304-5723365)
chr2 (130-202)||(7815320-7815392)
[»] chr8 (4 HSPs)
chr8 (141-201)||(3073921-3073981)
chr8 (130-201)||(12702682-12702753)
chr8 (130-201)||(15212835-15212906)
chr8 (140-201)||(34254379-34254440)
[»] chr7 (4 HSPs)
chr7 (130-201)||(23555089-23555160)
chr7 (130-201)||(5116653-5116725)
chr7 (129-201)||(34310764-34310836)
chr7 (142-193)||(38280867-38280919)
[»] chr4 (6 HSPs)
chr4 (130-201)||(27417013-27417084)
chr4 (130-201)||(40632494-40632565)
chr4 (130-201)||(56178685-56178756)
chr4 (130-200)||(4588008-4588078)
chr4 (130-201)||(26699490-26699562)
chr4 (130-174)||(44570441-44570485)
[»] chr3 (3 HSPs)
chr3 (130-201)||(7762314-7762385)
chr3 (130-201)||(30236174-30236245)
chr3 (130-202)||(51398863-51398935)
[»] chr1 (3 HSPs)
chr1 (130-201)||(31659287-31659358)
chr1 (133-174)||(1050519-1050560)
chr1 (141-173)||(48260373-48260405)
[»] scaffold0219 (1 HSPs)
scaffold0219 (130-201)||(27490-27562)
[»] scaffold0053 (1 HSPs)
scaffold0053 (130-174)||(25102-25146)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 35779270 - 35779452
Alignment:
Q  54 agggttagaaaacact----gaataaatcattgaatttcttcacaagaagaggtgcaaagagtaaacatacaagttgttattgttgaagataatttcttg 149  Q
    ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35779270 agggttagaaaacactttgtgaataaatcattgaatttcttcacaagaagaggtgcaaagagtaaacatacaagttgttattgttgaagataatttcttg 35779369  T
Q  150 taacattttggtttctctttgtaaaaacttattgacaatgaattggagagattcctcttttgcgatgtggatcaaatttgggc 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35779370 taacattttggtttctctttgtaaaaatttattgacaatgaattggagagattcctcttttgcgatgtggatcaaatttgggc 35779452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 35779504 - 35779568
Alignment:
Q  278 tattgtcatatttttctttattctcctttatcgtgtagttttgtcttcgcttgtttgatcacctt 342  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  35779504 tattgtcatatttttctttattctcctttatcgtgttgttttgtctttgcttgtttgatcacctt 35779568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 9049461 - 9049390
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||||| || |||||||||||    
T  9049461 ttgttgaagctaatttcttgtaaccattttgtatctctttgtaagaactcattgacagtggattggagagat 9049390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 13239800 - 13239871
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  13239800 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 13239871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 16137074 - 16137137
Alignment:
Q  140 taatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagatt 202  Q
    |||||||||||||| |||||||||||||||| ||| |||| ||||| | |||||| ||||||||    
T  16137074 taatttcttgtaaccttttggtttctctttgaaaacaactcattgatagtgaatttgagagatt 16137137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 28277528 - 28277579
Alignment:
Q  123 gttgttattgttgaagataatttcttgtaacattttggtttctctttgtaaa 174  Q
    |||||||||||| | | ||||||||| |||||||||||||||||||| ||||    
T  28277528 gttgttattgttaaggttaatttcttataacattttggtttctctttctaaa 28277579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 28278365 - 28278436
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||   || || |||||||||||||||| ||||| | || |||||||||||    
T  28278365 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaaaaactcattgatagtggattggagagat 28278436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 16135490 - 16135544
Alignment:
Q  148 tgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 201  Q
    |||||| |||||||||||||||||||| |||| ||| | ||||||||||||||||    
T  16135490 tgtaaccttttggtttctctttgtaaataactcattcataatgaattggagagat 16135544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 42310054 - 42310000
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattga 184  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| ||||||||||    
T  42310054 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaacttattga 42310000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 4561135 - 4561183
Alignment:
Q  128 tattgttgaagataatttcttgtaacattttggtttctctttgtaaaaa 176  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  4561135 tattgttgaagctaatttcttgtaacatttttgtatctctttgtaaaaa 4561183  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 24398106 - 24398178
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||  ||| || |||||||||||| |||| ||||| |||| |||||||||||    
T  24398106 ttgttgaagctaatttcttgtaacccttttgtatctctttgtaaagaactcattgataatggattggagagat 24398178  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 45726978 - 45727049
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| |||||||||||||| | || || ||||||||||| |||| ||||| | || |||||||||||    
T  45726978 ttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 45727049  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 5723365 - 5723304
Alignment:
Q  140 taatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    |||||||||||||| |||| || ||||||||||| |||| ||||| | || |||||||||||    
T  5723365 taatttcttgtaacctttttgtatctctttgtaagaactcattgatagtggattggagagat 5723304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 7815392 - 7815320
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagatt 202  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||| | | || ||||||||||||    
T  7815392 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcatttatagtggattggagagatt 7815320  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 3073981 - 3073921
Alignment:
Q  141 aatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    |||||||||||||||||| || ||||||||||| |||| ||||| ||||  ||||||||||    
T  3073981 aatttcttgtaacatttttgtatctctttgtaagaactcattgataatggcttggagagat 3073921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 12702753 - 12702682
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  12702753 ttgttgaagctaatttcttgtaacccttttgtgtctctttgtaagaactcattgatattggattggagagat 12702682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 15212835 - 15212906
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||   || || ||||||||||| |||| ||||| |||| |||||||||||    
T  15212835 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgataatggattggagagat 15212906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 34254440 - 34254379
Alignment:
Q  140 taatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||||||||  ||| || ||||||||||| |||||||||| | || |||||||||||    
T  34254440 taatttcttgtaacccttttgtatctctttgtaagaacttattgatagtggattggagagat 34254379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 23555089 - 23555160
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||| ||| ||  |||||||||| |||| ||||| | || |||||||||||    
T  23555089 ttgttgaagctaatttcttgtaacacttttgtacctctttgtaagaactcattgatagtggattggagagat 23555160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 5116653 - 5116725
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 201  Q
    |||||||||||||||| ||||||   ||| || |||||||||||| |||| ||||| | ||||||||||||||    
T  5116653 ttgttgaagataatttattgtaaaccttttgtatctctttgtaaagaactcattgatagtgaattggagagat 5116725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 34310836 - 34310764
Alignment:
Q  129 attgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    |||||||||| |||||||||||||||  || || ||| ||||||| |||| ||||| | || |||||||||||    
T  34310836 attgttgaagctaatttcttgtaacacatttgtatctttttgtaagaactcattgatagtggattggagagat 34310764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 38280867 - 38280919
Alignment:
Q  142 atttcttgtaacattttggtttctctttgt-aaaaacttattgacaatgaatt 193  Q
    |||||||||||| ||||||||||||||||| || |||| ||||||||| ||||    
T  38280867 atttcttgtaactttttggtttctctttgtgaagaactcattgacaataaatt 38280919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 27417084 - 27417013
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||   || || |||||||||||||||| ||||| | || |||||||||||    
T  27417084 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaaaaactcattgatagtggattggagagat 27417013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 40632494 - 40632565
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| |||||||||||||| | || || ||||||||||| |||| ||||| | || |||||||||||    
T  40632494 ttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 40632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 56178756 - 56178685
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  56178756 ttgttgaagctaatttcttgtaacccttttgtatctctttgtaagaactcattgatagtggattggagagat 56178685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 4588008 - 4588078
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagaga 200  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || ||||||||||    
T  4588008 ttgttgaagctaatttcttgtaacccttttgtatctctttgtaagaactcattgatagtggattggagaga 4588078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 26699562 - 26699490
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||  ||| || |||||||||||| |||| ||| | |||| |||||||||||    
T  26699562 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaaagaactcatttataatggattggagagat 26699490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 44570485 - 44570441
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa 174  Q
    ||||||||  ||||||||||||||||||| || ||||||||||||    
T  44570485 ttgttgaaactaatttcttgtaacatttttgtatctctttgtaaa 44570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 7762314 - 7762385
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  7762314 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 7762385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 30236174 - 30236245
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| |||||||||||||| | || || ||||||||||| |||| ||||| | || |||||||||||    
T  30236174 ttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 30236245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 51398863 - 51398935
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagatt 202  Q
    ||||||||| ||||||||||||||   || || ||||||||||| |||| ||||| | || ||||||||||||    
T  51398863 ttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagatt 51398935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 31659287 - 31659358
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||   || || ||||||||||| |||||||||| | || |||||||||||    
T  31659287 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaacttattgatagtggattggagagat 31659358  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 1050560 - 1050519
Alignment:
Q  133 ttgaagataatttcttgtaacattttggtttctctttgtaaa 174  Q
    |||||| ||||||||||||||||||| || ||||||||||||    
T  1050560 ttgaagctaatttcttgtaacatttttgtgtctctttgtaaa 1050519  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 48260373 - 48260405
Alignment:
Q  141 aatttcttgtaacattttggtttctctttgtaa 173  Q
    ||||| |||||||||||||||||||||||||||    
T  48260373 aatttattgtaacattttggtttctctttgtaa 48260405  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 27562 - 27490
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 201  Q
    ||||||||| ||||||||||||||   || || |||||||||||| |||||||||| | || |||||||||||    
T  27562 ttgttgaagctaatttcttgtaactcatttgtatctctttgtaaataacttattgatagtggattggagagat 27490  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 25102 - 25146
Alignment:
Q  130 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa 174  Q
    ||||||||| |||||||||||||| |||| || ||||||||||||    
T  25102 ttgttgaaggtaatttcttgtaacctttttgtatctctttgtaaa 25146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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