View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16588_low_2 (Length: 984)
Name: NF16588_low_2
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 298 - 966
Target Start/End: Original strand, 19765149 - 19765827
Alignment:
| Q |
298 |
ctaaattggatcataatcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtcttatatatcatagaataaaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19765149 |
ctaaattggatcataatcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtcttatatatcatagaataaaa |
19765248 |
T |
|
| Q |
398 |
gcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaagtg----------agtagattaacttacctgaataagtat |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19765249 |
gcatactgtgctcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaagtgccactctctgagtagattaacttacctgaataagtat |
19765348 |
T |
|
| Q |
488 |
ttaattatatgaataatgctcactttgtttgtaaaaacatatttcaggtgaatttccccgaacatgccgccattcctacatttgataacttaacttacct |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19765349 |
ttaattatatgaataatgctcactttgtttgtaaaaacatatttcaggtgaatttccccgaacatgccgccattcctacatttgataacttaacttacct |
19765448 |
T |
|
| Q |
588 |
gaaaataaattccttgaactaccgttggcgttttttagttgaagtactaaagcactgccctaagcttgaaaaactaatccttaatgaggtttgttaaata |
687 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19765449 |
gaaaataaattccttgaactaccgttggcattttttagttgaagtactaaagcactgccttaagcttgaaaaactaatccttaatgaggtttgttaaata |
19765548 |
T |
|
| Q |
688 |
tcatattattacaaatttatcttttcacaacacatctttagcttttgttttaatttcatacacattactaacaggctggtggccatggtgcaacaagcga |
787 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19765549 |
tcatattattacaaatttatcttttcataacacatctttagcttttgatttaatttcatacgcattactaacaggctggtggccatggtgcaacaagcga |
19765648 |
T |
|
| Q |
788 |
aacatggagtagaaaagatgataaggaacaatgggtcgaccctaaagttgtcccggaatgtctgtcatcacatttaaaaagttgtgatctttacacattc |
887 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19765649 |
aacatggagtagaaaagatgataaggaacaatgggtcgaccctaaagttgtcccggaatgtctgtcatcacatttaaaaagttgcgatctttacacattc |
19765748 |
T |
|
| Q |
888 |
ttaggccttgaaggagagcttcatctagcatgctacatattgaagaatgcaagagttttggaagagatgatgatatgga |
966 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19765749 |
ttaggccttgaaggagagcttcatctagcatgctacatattgaagaatgcaagagttttggaagagatgatgatatgga |
19765827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 19764865 - 19765068
Alignment:
| Q |
12 |
gattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaannnnnnnnnnatattggggtgtttctgtttaatgcatttttattcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19764865 |
gattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatttttttt--atattggggtgtttctgtttaatgcatttttattcaa |
19764962 |
T |
|
| Q |
112 |
aaacgttggtgggttttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19764963 |
aaacgttggtgggttttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtga |
19765062 |
T |
|
| Q |
212 |
atgaag |
217 |
Q |
| |
|
|||||| |
|
|
| T |
19765063 |
atgaag |
19765068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 19764853 - 19764923
Alignment:
| Q |
117 |
ttggtgggttttgattattcttcat-aaacaatcataggttctagaaaaaagttgtaaaaatcaaattttt |
186 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || |||||| || |||| ||||||||||||| ||||| |
|
|
| T |
19764853 |
ttggtgggttttgattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatttttt |
19764923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 3e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 394318 - 394518
Alignment:
| Q |
14 |
ttattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaannnnnnnnnnatattggggtgtttctgtttaatgcatttttattcaaaa |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394318 |
ttattcttcgtaaaacaataatgggttcttgagaaaacttttaaaaatcaaatttttt---atattggggtgtttctgtttaatgcatttttattcaaaa |
394414 |
T |
|
| Q |
114 |
acgttggtgggttttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394415 |
acgttggtgggttttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaat |
394514 |
T |
|
| Q |
214 |
gaag |
217 |
Q |
| |
|
|||| |
|
|
| T |
394515 |
gaag |
394518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 394611 - 394677
Alignment:
| Q |
313 |
atcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtctt |
379 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
394611 |
atcacattatgtatttttgactgtgtctgaaattggtctcttgaatatgatttctttggtttgtctt |
394677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 394304 - 394374
Alignment:
| Q |
117 |
ttggtgggttttgattattcttcataaa-caatcataggttctagaaaaaagttgtaaaaatcaaattttt |
186 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||| || |||||| || |||| || |||||||||||||||| |
|
|
| T |
394304 |
ttggtgggttttgtttattcttcgtaaaacaataatgggttcttgagaaaacttttaaaaatcaaattttt |
394374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 12196802 - 12196880
Alignment:
| Q |
380 |
atatatcatagaataaaagcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaag |
458 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12196802 |
atatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaag |
12196880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 12441230 - 12441308
Alignment:
| Q |
380 |
atatatcatagaataaaagcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaag |
458 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12441230 |
atatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaag |
12441308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University