View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_20 (Length: 340)
Name: NF16588_low_20
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 43 - 331
Target Start/End: Complemental strand, 2098967 - 2098679
Alignment:
| Q |
43 |
tattggttatccgtcaattaattcttttgattgattgtctctctccctcttggtttctcttatgtttgactgtctttctccnnnnnnnattcttctgttt |
142 |
Q |
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| T |
2098967 |
tattggttatctctcaattaattcttttgattgattgtctctctccctcttggtttctcttatgtttgattgtctttctcctttttttattcttctgttt |
2098868 |
T |
|
| Q |
143 |
gattacacttttccttgttgattcttctgtttcattgcatttcttcctattgattctcctgattgattgtatttctcccttttgattattttgtatggtt |
242 |
Q |
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| T |
2098867 |
gattacatttttccttgttgattcttctgtttgattgcatttcttcctattgattctcctgattgattgtatttctccctttcgattattttgtatggtt |
2098768 |
T |
|
| Q |
243 |
gcttctccttgctggttcttttgtttagtttggtttgattcaattcttttctttggatgatttctctctttgacaaattgatgatgatg |
331 |
Q |
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| T |
2098767 |
gcttctccttgctggttcttttgtttagtttggtttgattcagttcttttctttggatgatttctctctttgacaaattgatgatgatg |
2098679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 16579452 - 16579393
Alignment:
| Q |
176 |
attgcatttcttcctattgattctcctgattgattgtatttctcccttttgattattttg |
235 |
Q |
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| T |
16579452 |
attgcacttctccctattgattattctgattgattgtacttctccctagtgattattttg |
16579393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 2484668 - 2484743
Alignment:
| Q |
239 |
ggttgcttctccttgctggttcttttgtttagtttggtttgattcaattcttttctttggatgatttctctctttg |
314 |
Q |
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| T |
2484668 |
ggttgcttctcaatgccggttattttgtttggtttggtttgacttggttcttttatttggatggtttctctctttg |
2484743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 2484453 - 2484490
Alignment:
| Q |
63 |
attcttttgattgattgtctctctccctcttggtttct |
100 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| |
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| T |
2484453 |
attcttttgattgattgtatctctccctcttgatttct |
2484490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 3889163 - 3889208
Alignment:
| Q |
234 |
tgtatggttgcttctccttgctggttcttttgtttagtttggtttg |
279 |
Q |
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||||||||||||||||| | | ||||||||||||| |||||||||| |
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| T |
3889163 |
tgtatggttgcttctccctaccggttcttttgtttggtttggtttg |
3889208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 6532148 - 6532196
Alignment:
| Q |
160 |
ttgattcttctgtttcattgcatttcttcctattgattctcctgattga |
208 |
Q |
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|||||||||||| || |||||| |||| |||||||||||| |||||||| |
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| T |
6532148 |
ttgattcttctgattgattgcacttctccctattgattcttctgattga |
6532196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 24225658 - 24225726
Alignment:
| Q |
155 |
ccttgttgattcttctgtttcattgcatttcttcctatt--gattctcctgattgattgtatttctccc |
221 |
Q |
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|||| |||||||||||| ||||||||| || ||||| || |||||| ||||||||||| ||||||||| |
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| T |
24225658 |
cctttttgattcttctgattcattgcactttttcctcttttgattcttctgattgattgcatttctccc |
24225726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 22825764 - 22825728
Alignment:
| Q |
64 |
ttcttttgattgattgtctctctccctcttggtttct |
100 |
Q |
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||||||||||| |||||||||||||||||| |||||| |
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| T |
22825764 |
ttcttttgatttattgtctctctccctcttagtttct |
22825728 |
T |
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