View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_21 (Length: 319)
Name: NF16588_low_21
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25641928 - 25641742
Alignment:
| Q |
30 |
aaggaataataatgtcaaagccacatcggaagtgctgaggttcctgaaacaaagataagtatgcatatattagaataagataaaaagtgaccgactctga |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||| |||| || |||||||||||||| | |
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| T |
25641928 |
aaggaataataatgtcaaagccacatcggaagtgacgaggttcctgaaatacagacaagtatgcatatattagaaaaagagaagaagtgaccgactctaa |
25641829 |
T |
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| Q |
130 |
aactggactataggggtaaagtaaggtaaggtaggcataatacacacctcaactagtctttttagccatttaaataagtatgctgac |
216 |
Q |
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| T |
25641828 |
aactggactatatggggaaggtaaggtaaggtaggcataatacacacctcaactagtcttcttagccatttaaataagtatgctgac |
25641742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 25630893 - 25630841
Alignment:
| Q |
152 |
aaggtaaggtaggcataatacacacctcaactagtctttttagccatttaaat |
204 |
Q |
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| T |
25630893 |
aaggtaaggtaggcataatacacacatcaactagtctttttagccattcaaat |
25630841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 25641710 - 25641674
Alignment:
| Q |
266 |
ccagcttgggacaatcaaacatatataatcctgatct |
302 |
Q |
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| T |
25641710 |
ccagcttaggacaatcaaaaatatataatcctgatct |
25641674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 495767 - 495812
Alignment:
| Q |
30 |
aaggaataataatgtcaaagccacatcggaagtgctgaggttcctg |
75 |
Q |
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| T |
495767 |
aaggaagaacaatgtcaaagccacatcggaagtgacgaggttcctg |
495812 |
T |
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