View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_23 (Length: 313)
Name: NF16588_low_23
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_23 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 6879507 - 6879294
Alignment:
| Q |
18 |
ctatctgtcgacataacatcaaacagaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaatagattatctt |
117 |
Q |
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|||||||| |||||| |||||||||||| ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6879507 |
ctatctgttgacatagcatcaaacagaaacagtgactgtctagaagaattttctgatttttctctgatgtattcatgttatataccaaatagattatcaa |
6879408 |
T |
|
| Q |
118 |
tatcatcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattc |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
6879407 |
tatcatcatcatcatatgttttgcatggtatacaacttcttgagcctctaatttcagtgcttcattagcacaaattatttaaaacaatctcatggcattc |
6879308 |
T |
|
| Q |
218 |
ttcattttcaaatt |
231 |
Q |
| |
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|||||||||||||| |
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| T |
6879307 |
ttcattttcaaatt |
6879294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 274
Target Start/End: Complemental strand, 6235002 - 6234770
Alignment:
| Q |
40 |
acagaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaatagattatctttatcatcatcatcatatgtttt |
139 |
Q |
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|||||| || |||||| || |||||||||||||| | ||||||| | |||||||||||||| ||||| |||||||| ||||||||| ||||| |
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| T |
6235002 |
acagaaacattggctggctgcaagaattttctcacttttctctgctatattcatgttatatgccaaacagattatc---------atcatcataggtttt |
6234912 |
T |
|
| Q |
140 |
gcatagtatacaacttcttgagcctctaatttcagtgcttcatta-------gcacaagttatttaaaactatctcatggcattcttcattttcaaattt |
232 |
Q |
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||||| ||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||| |||| |||||| |||||||||||| |
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| T |
6234911 |
gcataacatacagcttcttgagcctctaatttaagtgcttcattaattattagcacaaattatttaaaaccatctgatgggattctttattttcaaattt |
6234812 |
T |
|
| Q |
233 |
tactcattctacctacagatatataagtgttttaaatgttga |
274 |
Q |
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|||| |||||||||| |||||| |||| |||||| |||||| |
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| T |
6234811 |
tacttattctacctattgatataaaagtattttaattgttga |
6234770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 122 - 274
Target Start/End: Original strand, 6852235 - 6852387
Alignment:
| Q |
122 |
atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca |
221 |
Q |
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|||||||||||| ||| ||||||| ||||||||||| || | |||||||||| ||||||||| |||||| |||||||| || ||||||||||||||| | |
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| T |
6852235 |
atcatcatcataagttatgcatagcatacaacttctagaccgtctaatttcattgcttcattggcacaaattatttaataccgtctcatggcattcttta |
6852334 |
T |
|
| Q |
222 |
ttttcaaattttactcattctacctacagatatataagtgttttaaatgttga |
274 |
Q |
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||||||| ||||||| ||| ||||| |||||| ||||||||||| |||||| |
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| T |
6852335 |
ttttcaatttttacttgttccacctattgatataaaagtgttttaattgttga |
6852387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 6725151 - 6725264
Alignment:
| Q |
122 |
atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca |
221 |
Q |
| |
|
|||||||||||| ||| |||||| |||||| |||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||| | |
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| T |
6725151 |
atcatcatcataagttatgcatatcatacaaattctggagcctctaatttcattgcttcattagcacaaattctttaataccatctcatggcattcttta |
6725250 |
T |
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| Q |
222 |
ttttcaaattttac |
235 |
Q |
| |
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||||||| |||||| |
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| T |
6725251 |
ttttcaatttttac |
6725264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 6255777 - 6255599
Alignment:
| Q |
61 |
aagaattttctcattgttctctgatgtattcatgttatataccaaatagattatctttatcatcatcatcatatgttttgcatagtatacaacttcttga |
160 |
Q |
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||||||||||||||| ||||||| | ||||||||||||| ||||||||| ||| ||||||||| |||||||||| ||||| |||||||| |
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| T |
6255777 |
aagaattttctcatttttctctgctatattcatgttatacgtcaaatagataatc---------atcatcataagttttgcataacatacagcttcttga |
6255687 |
T |
|
| Q |
161 |
gcctctaatttcagtgcttc-------attagcacaagttatttaaaactatctcatggcattcttcattttcaaattttactcattc |
241 |
Q |
| |
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||||||||||| |||||||| |||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| |||| |
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| T |
6255686 |
gcctctaatttaagtgcttcattaattattagcacaaattatttaaaaccatccgatgggattcttcattttcaaattttacttattc |
6255599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 6411710 - 6411807
Alignment:
| Q |
122 |
atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattctt |
219 |
Q |
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|
||||||| |||| ||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||| |
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| T |
6411710 |
atcatcaccataagttatgcatagcgtacaacttctagagcctctaatttcattgcttcattagcacaaattctttaataccatctcatggcattctt |
6411807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 6594441 - 6594597
Alignment:
| Q |
122 |
atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca |
221 |
Q |
| |
|
|||||||||||| ||| | |||| |||||| |||| ||| |||||||||| ||||||||||||| || || ||||| || |||||||||||||||| | |
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| T |
6594441 |
atcatcatcataagttatccatatcatacaaattctagagtttctaatttcattgcttcattagcaaaaattctttaataccatctcatggcattcttta |
6594540 |
T |
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| Q |
222 |
ttttcaaattttactcattctacctacagatatataagtgttttaaatgttgagatc |
278 |
Q |
| |
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||||||| |||||| |||| ||||| |||||| || |||||||| ||| |||||| |
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|
| T |
6594541 |
ttttcaatttttacgtattccacctattgatataaaactgttttaattgtggagatc |
6594597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 6165771 - 6165696
Alignment:
| Q |
40 |
acagaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaatagattatc |
115 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||||| |
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| T |
6165771 |
acagaaacagtggctgcctacaagaattttctcatttttctctgctatattcatgttatatgccaaatagattatc |
6165696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 6897080 - 6897029
Alignment:
| Q |
18 |
ctatctgtcgacataacatcaaacagaagcagtggctgtctacaagaatttt |
69 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6897080 |
ctatctgttgacataacatcaaacagaagcagtggctgtctacaagaatttt |
6897029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 6165688 - 6165635
Alignment:
| Q |
181 |
attagcacaagttatttaaaactatctcatggcattcttcattttcaaatttta |
234 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
6165688 |
attagcacaaattatttaaaaccatctcatgggattctttattttcaaatttta |
6165635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 122 - 274
Target Start/End: Original strand, 14668 - 14820
Alignment:
| Q |
122 |
atcatcatcatatgttttgcatagtatacaacttcttgagcctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttca |
221 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||| || | |||||||||| |||||||||||||||| |||||||| || ||||||||||||||| | |
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| T |
14668 |
atcatcatcataagttatgcatagcatacaacttctagaccgtctaatttcattgcttcattagcacaaattatttaataccgtctcatggcattcttta |
14767 |
T |
|
| Q |
222 |
ttttcaaattttactcattctacctacagatatataagtgttttaaatgttga |
274 |
Q |
| |
|
||||||| ||||||| ||| ||||| |||||| | ||||||||| |||||| |
|
|
| T |
14768 |
ttttcaatttttacttgttccacctattgatataaacgtgttttaattgttga |
14820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 6576048 - 6576115
Alignment:
| Q |
163 |
ctctaatttcagtgcttcattagcacaagttatttaaaactatctcatggcattcttcattttcaaatt |
231 |
Q |
| |
|
|||||||||||| ||||||||| || || ||||||||||| || | ||| ||||||| ||||||||||| |
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| T |
6576048 |
ctctaatttcagcgcttcattaacagaatttatttaaaac-atttaatgccattctttattttcaaatt |
6576115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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