View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_25 (Length: 308)
Name: NF16588_low_25
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 186 - 288
Target Start/End: Original strand, 27328409 - 27328511
Alignment:
| Q |
186 |
taaacctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtccaccaccc |
285 |
Q |
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| T |
27328409 |
taaagctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtccaccaccc |
27328508 |
T |
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| Q |
286 |
agt |
288 |
Q |
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||| |
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| T |
27328509 |
agt |
27328511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 27328301 - 27328414
Alignment:
| Q |
38 |
agacacactcgaacatgatcgttgatcatattatcaagattgtttgcagctgtccattcagacagctgt-----ccaggattttggatcctaaaacatta |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||| |
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| T |
27328301 |
agacacactcgaacatgatcgttgatcatattatcaagattgtttgcagctgtc----cgaacagctgtctaagctaggattttggatcctaaaacatta |
27328396 |
T |
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| Q |
133 |
attcttccactataaagc |
150 |
Q |
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|||| ||||||||||||| |
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| T |
27328397 |
attcctccactataaagc |
27328414 |
T |
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