View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_30 (Length: 283)
Name: NF16588_low_30
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 48487557 - 48487300
Alignment:
| Q |
12 |
atgaattcaagtggtgaacaaaaaggaattcagttttgtgcagttcttgatatgcagattagtaatgacaaaggtgttatacatgttttagacgacaaga |
111 |
Q |
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| T |
48487557 |
atgaattcaagtggtgaacaaaaaggaattcagttttgtgcagttcttgatatgcagattagtaatgacaaaggtgttatacatgttttagacgacaaga |
48487458 |
T |
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| Q |
112 |
agtttagagttgaaggttcagattgggctattttgcttctgacagcttcctcgtcctttgatggtccatttactaatcctgaagactcaaagaaggatcc |
211 |
Q |
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| T |
48487457 |
agtttagagttgaaggttcagattgggctattttgcttctgacagcttcctcgtcctttgatggtccatttactaatcctgaagactcaaagaaggatcc |
48487358 |
T |
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| Q |
212 |
tactactgagtccttgagtaaaatgaagtctgcaaaaagcttttcatatgatgatatt |
269 |
Q |
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| T |
48487357 |
tactactgagtccttgagtaaaatgaaatctgcaaaaagcttttcatatgatgatatt |
48487300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 52856747 - 52856491
Alignment:
| Q |
13 |
tgaattcaagtggtgaacaaaaaggaattcagttttgtgcagttcttgatatgcagattagtaatgacaaaggtgttatacatgttttagacgacaagaa |
112 |
Q |
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| T |
52856747 |
tgaattcaagtgacgaaccaaagggaattcagttttctgcagttcttgatgtgcagatcagtaatgaaaaaggagttatacatgttttggatgataagaa |
52856648 |
T |
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| Q |
113 |
gtttagagttgaaggttcagattgggctattttgcttctgacagcttcctcgtcctttgatggtccatttactaatcctgaagactcaaagaaggatcct |
212 |
Q |
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| T |
52856647 |
gcttagagttgaaggttcagattgggctattttgcttctgacagcttcctcgtcgtttgatggtccatttactaatcctgaaaactctaagaaagatctt |
52856548 |
T |
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| Q |
213 |
actactgagtccttgagtaaaatgaagtctgcaaaaagcttttcatatgatgatatt |
269 |
Q |
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||| | |||||||||||||||||||||| || | |||||| ||||||||||||| |
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| T |
52856547 |
acttccgagtccttgagtaaaatgaagtttgtgacaagcttaaaatatgatgatatt |
52856491 |
T |
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