View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16588_low_32 (Length: 278)

Name: NF16588_low_32
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16588_low_32
NF16588_low_32
[»] chr4 (6 HSPs)
chr4 (183-258)||(5181476-5181551)
chr4 (184-260)||(5159249-5159325)
chr4 (183-234)||(5194831-5194882)
chr4 (184-245)||(4843278-4843339)
chr4 (144-182)||(4843423-4843461)
chr4 (148-182)||(5172102-5172136)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 5181476 - 5181551
Alignment:
Q  183 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaattt 258  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  5181476 ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaattt 5181551  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 5159249 - 5159325
Alignment:
Q  184 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgt 260  Q
    ||||| ||||||||||||||||  |||| ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  5159249 cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgt 5159325  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
Q  183 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5194831 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc 5194882  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
Q  184 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt 245  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  4843339 cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt 4843278  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 4843461 - 4843423
Alignment:
Q  144 gaaaaaatatgttttgtcactctccacataatactcttt 182  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  4843461 gaaaaaatatggtttgccactctccacataatactcttt 4843423  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 5172102 - 5172136
Alignment:
Q  148 aaatatgttttgtcactctccacataatactcttt 182  Q
    |||||||||||| ||||||||||||||||||||||    
T  5172102 aaatatgttttgccactctccacataatactcttt 5172136  T

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