View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16588_low_34 (Length: 272)
Name: NF16588_low_34
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 7160997 - 7161240
Alignment:
| Q |
11 |
cacagacaactgttcctgaaccatccgcaccaaaaggggtataaggaaaattctgaatccttctccaagagttagtacccaaagtatgaagcatagtttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7160997 |
cacagacaactgttcctgaaccatccgcaccaaaaggggtataaggaaaattctgaatccttctccaagagttagtacccaaagtatgaagcatagtttg |
7161096 |
T |
|
| Q |
111 |
atttttgtcaagcccataatgagaaccgtcatcactataccaatcaacaacaacaaccttgtaagtgtcacttacatgatcatagccaaagccatacagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161097 |
atttttgtcaagcccataatgagaaccgtcatcactataccaatcaacaacaacaaccttgtaagtgtcacttacatgatcatagccaaagccatacagt |
7161196 |
T |
|
| Q |
211 |
ctgcaaagcccctctcgttctggatagcccaaagagggcaattt |
254 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7161197 |
ctgcaaagcccctctcgttctgtatagcccaaagagggcaattt |
7161240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 11237370 - 11237315
Alignment:
| Q |
151 |
caatcaacaacaacaaccttgtaagtgtcacttacatgatcatagccaaagccata |
206 |
Q |
| |
|
|||| |||| |||||||||||||| ||||| | ||||||||||||||||| ||||| |
|
|
| T |
11237370 |
caataaacagcaacaaccttgtaaatgtcattgacatgatcatagccaaaaccata |
11237315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University