View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_38 (Length: 248)
Name: NF16588_low_38
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_38 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 29112494 - 29112731
Alignment:
| Q |
15 |
aatatgatcaatctttgtagcttcccaatttgtctttccaaaacattgattaggtacagtagcttcctttattagcaaagttatttgtgatcaaagatgg |
114 |
Q |
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| T |
29112494 |
aatatgatcaatctttgtagcttcccaatttgtctttccaaaacattgattaggtacagtagcttcctt-attagcaaagttatttgtaatcaaagatgg |
29112592 |
T |
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| Q |
115 |
gagaaatctggttcctcggagtggtgaggcacttggccaccataagtggttag-----gaatcttggctatgagaaaatttggtttggagaggagaagct |
209 |
Q |
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| T |
29112593 |
gagaaatctggttcctcggagtggtaaggcacttggccaccataagtggttagggttcgaatcttggctatgagaaaatttggtttggagaggagaatct |
29112692 |
T |
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| Q |
210 |
acattacgtggccaataaattctccgacaaagatctatc |
248 |
Q |
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| T |
29112693 |
acattacgtggccaataaattctccgacaaagatctatc |
29112731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 33313324 - 33313262
Alignment:
| Q |
17 |
tatgatcaatctttgtagcttcccaatttgtctttccaaaacattgattaggtacagtagctt |
79 |
Q |
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| T |
33313324 |
tatgatcaatctttgtagcttcccaatttgtctttccaaaacattgattaggtacagtagctt |
33313262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 33313152 - 33313085
Alignment:
| Q |
181 |
gagaaaatttggtttggagaggagaagctacattacgtggccaataaattctccgacaaagatctatc |
248 |
Q |
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| T |
33313152 |
gagaaaatttggtttggagaggagaatctacattatgtggttaataaattccacgacaaagatctatc |
33313085 |
T |
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