View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16588_low_46 (Length: 229)

Name: NF16588_low_46
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16588_low_46
NF16588_low_46
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-222)||(162999-163220)
[»] chr3 (16 HSPs)
chr3 (1-222)||(17738574-17738795)
chr3 (1-222)||(19039894-19040115)
chr3 (40-216)||(13028614-13028790)
chr3 (37-174)||(15262357-15262494)
chr3 (56-212)||(2037186-2037342)
chr3 (56-212)||(2040927-2041083)
chr3 (56-212)||(14039445-14039601)
chr3 (40-190)||(19727471-19727621)
chr3 (37-174)||(12843369-12843506)
chr3 (56-212)||(15008855-15009011)
chr3 (6-216)||(12508788-12508998)
chr3 (125-179)||(15013112-15013166)
chr3 (160-216)||(15446458-15446514)
chr3 (43-174)||(15065798-15065929)
chr3 (56-174)||(16804232-16804350)
chr3 (56-115)||(23415075-23415134)
[»] scaffold0046 (2 HSPs)
scaffold0046 (1-216)||(12232-12447)
scaffold0046 (1-216)||(27-242)
[»] chr1 (11 HSPs)
chr1 (1-216)||(20921523-20921738)
chr1 (35-183)||(21045221-21045369)
chr1 (40-174)||(22116891-22117025)
chr1 (6-174)||(16379217-16379385)
chr1 (56-174)||(24784975-24785093)
chr1 (51-174)||(21176551-21176674)
chr1 (56-174)||(21228674-21228792)
chr1 (56-174)||(22435851-22435969)
chr1 (64-174)||(22401715-22401825)
chr1 (56-174)||(22496374-22496492)
chr1 (37-117)||(21752227-21752307)
[»] chr8 (13 HSPs)
chr8 (5-216)||(3274298-3274509)
chr8 (52-190)||(22245500-22245638)
chr8 (52-190)||(22245918-22246056)
chr8 (37-174)||(22990219-22990356)
chr8 (139-212)||(6607041-6607114)
chr8 (37-155)||(22523703-22523821)
chr8 (7-174)||(22421333-22421499)
chr8 (56-174)||(21164027-21164145)
chr8 (56-174)||(30310633-30310751)
chr8 (57-174)||(15536557-15536674)
chr8 (64-174)||(21391358-21391468)
chr8 (64-174)||(21780684-21780794)
chr8 (183-216)||(23948673-23948706)
[»] chr6 (9 HSPs)
chr6 (5-216)||(18659849-18660060)
chr6 (40-216)||(25958928-25959104)
chr6 (6-120)||(18182529-18182643)
chr6 (6-117)||(23084966-23085077)
chr6 (40-174)||(23081395-23081529)
chr6 (5-92)||(18325914-18326001)
chr6 (31-174)||(30678190-30678333)
chr6 (56-174)||(25756806-25756924)
chr6 (56-98)||(19867735-19867777)
[»] scaffold0429 (1 HSPs)
scaffold0429 (9-216)||(1424-1631)
[»] scaffold0282 (1 HSPs)
scaffold0282 (40-174)||(13512-13646)
[»] scaffold0074 (1 HSPs)
scaffold0074 (40-190)||(6234-6384)
[»] scaffold0010 (2 HSPs)
scaffold0010 (40-174)||(5052-5186)
scaffold0010 (184-216)||(1971-2003)
[»] scaffold0270 (2 HSPs)
scaffold0270 (37-174)||(7010-7147)
scaffold0270 (37-174)||(14140-14277)
[»] scaffold0012 (1 HSPs)
scaffold0012 (25-174)||(216438-216587)
[»] scaffold0161 (1 HSPs)
scaffold0161 (40-216)||(35926-36102)
[»] scaffold0040 (1 HSPs)
scaffold0040 (6-146)||(18010-18150)
[»] chr5 (13 HSPs)
chr5 (25-173)||(21631596-21631744)
chr5 (56-212)||(16258264-16258420)
chr5 (56-212)||(22591983-22592139)
chr5 (56-212)||(22595538-22595694)
chr5 (37-174)||(21332195-21332332)
chr5 (94-209)||(23669619-23669734)
chr5 (40-101)||(23474308-23474369)
chr5 (37-174)||(26735936-26736073)
chr5 (139-212)||(43122451-43122524)
chr5 (56-117)||(23526148-23526209)
chr5 (6-182)||(21410166-21410342)
chr5 (43-174)||(23461011-23461142)
chr5 (64-117)||(25429518-25429571)
[»] chr4 (8 HSPs)
chr4 (40-183)||(14697200-14697343)
chr4 (104-212)||(13879179-13879287)
chr4 (37-174)||(16219296-16219433)
chr4 (37-174)||(16222616-16222753)
chr4 (56-174)||(13513458-13513576)
chr4 (37-98)||(14162654-14162715)
chr4 (184-216)||(14652026-14652058)
chr4 (184-216)||(14851628-14851660)
[»] scaffold0529 (1 HSPs)
scaffold0529 (6-162)||(5237-5393)
[»] scaffold0001 (2 HSPs)
scaffold0001 (6-117)||(441846-441957)
scaffold0001 (40-174)||(496157-496291)
[»] scaffold0342 (1 HSPs)
scaffold0342 (40-174)||(14299-14433)
[»] chr7 (6 HSPs)
chr7 (19-173)||(15627622-15627776)
chr7 (56-115)||(11984148-11984207)
chr7 (56-102)||(9591533-9591579)
chr7 (37-174)||(14042792-14042929)
chr7 (37-174)||(14352822-14352959)
chr7 (184-216)||(15203586-15203618)
[»] scaffold0018 (2 HSPs)
scaffold0018 (6-155)||(23297-23446)
scaffold0018 (25-174)||(9369-9518)
[»] scaffold0077 (1 HSPs)
scaffold0077 (37-172)||(57644-57779)
[»] scaffold0042 (2 HSPs)
scaffold0042 (26-193)||(26470-26637)
scaffold0042 (56-174)||(36869-36987)
[»] scaffold0011 (2 HSPs)
scaffold0011 (40-174)||(23566-23700)
scaffold0011 (183-216)||(36869-36902)
[»] scaffold0447 (1 HSPs)
scaffold0447 (37-174)||(1894-2031)
[»] scaffold0383 (1 HSPs)
scaffold0383 (37-174)||(4758-4895)
[»] scaffold0331 (1 HSPs)
scaffold0331 (6-174)||(14978-15146)
[»] scaffold0006 (1 HSPs)
scaffold0006 (37-190)||(104348-104501)
[»] scaffold0507 (1 HSPs)
scaffold0507 (40-190)||(11149-11299)
[»] scaffold0293 (1 HSPs)
scaffold0293 (40-174)||(15547-15681)
[»] chr2 (11 HSPs)
chr2 (94-212)||(28350576-28350694)
chr2 (104-209)||(19647593-19647698)
chr2 (25-174)||(24817395-24817544)
chr2 (125-182)||(19817578-19817635)
chr2 (56-174)||(22463067-22463185)
chr2 (56-174)||(24705068-24705186)
chr2 (56-117)||(23029047-23029108)
chr2 (56-98)||(22742552-22742594)
chr2 (64-117)||(22733368-22733421)
chr2 (125-174)||(30208575-30208624)
chr2 (6-50)||(19817683-19817727)
[»] scaffold0609 (1 HSPs)
scaffold0609 (127-212)||(1038-1123)
[»] scaffold0177 (2 HSPs)
scaffold0177 (56-190)||(11405-11539)
scaffold0177 (56-174)||(15090-15208)
[»] scaffold0044 (1 HSPs)
scaffold0044 (56-174)||(17297-17415)
[»] scaffold0035 (1 HSPs)
scaffold0035 (104-174)||(41205-41275)
[»] scaffold0261 (1 HSPs)
scaffold0261 (140-216)||(17009-17085)
[»] scaffold0028 (1 HSPs)
scaffold0028 (70-182)||(128537-128649)
[»] scaffold0230 (1 HSPs)
scaffold0230 (5-92)||(18354-18441)
[»] scaffold0451 (1 HSPs)
scaffold0451 (56-174)||(14081-14199)
[»] scaffold0297 (1 HSPs)
scaffold0297 (56-182)||(7706-7832)
[»] scaffold0022 (2 HSPs)
scaffold0022 (37-174)||(41769-41906)
scaffold0022 (37-174)||(75489-75626)
[»] scaffold0100 (1 HSPs)
scaffold0100 (9-173)||(16611-16775)
[»] scaffold0071 (1 HSPs)
scaffold0071 (160-216)||(15678-15734)
[»] scaffold0285 (1 HSPs)
scaffold0285 (56-102)||(5207-5253)
[»] scaffold0080 (3 HSPs)
scaffold0080 (56-174)||(32016-32134)
scaffold0080 (56-174)||(37482-37600)
scaffold0080 (37-117)||(54831-54911)
[»] scaffold0148 (1 HSPs)
scaffold0148 (126-179)||(2131-2184)
[»] scaffold0017 (3 HSPs)
scaffold0017 (125-174)||(24443-24492)
scaffold0017 (58-174)||(17117-17233)
scaffold0017 (6-50)||(24567-24611)
[»] scaffold0120 (1 HSPs)
scaffold0120 (37-117)||(14278-14358)
[»] scaffold0008 (1 HSPs)
scaffold0008 (56-160)||(1-105)
[»] scaffold0412 (1 HSPs)
scaffold0412 (56-174)||(15628-15746)
[»] scaffold0273 (1 HSPs)
scaffold0273 (56-174)||(177-295)
[»] scaffold0243 (1 HSPs)
scaffold0243 (67-161)||(24005-24099)
[»] scaffold0081 (2 HSPs)
scaffold0081 (56-174)||(21741-21859)
scaffold0081 (56-174)||(37165-37283)
[»] scaffold0064 (1 HSPs)
scaffold0064 (56-174)||(69470-69588)
[»] scaffold0009 (1 HSPs)
scaffold0009 (56-102)||(229901-229947)
[»] scaffold0114 (1 HSPs)
scaffold0114 (37-174)||(17379-17516)
[»] scaffold0102 (1 HSPs)
scaffold0102 (56-101)||(50394-50439)
[»] scaffold0411 (1 HSPs)
scaffold0411 (184-216)||(15604-15636)
[»] scaffold0289 (1 HSPs)
scaffold0289 (56-92)||(7-43)
[»] scaffold0122 (1 HSPs)
scaffold0122 (61-117)||(40561-40617)
[»] scaffold0005 (1 HSPs)
scaffold0005 (184-216)||(165234-165266)


Alignment Details
Target: scaffold0007 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 162999 - 163220
Alignment:
Q  1 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  162999 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattggttctcaat 163098  T
Q  101 gcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgag 200  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  163099 gcgagaaacctaagaagactcaaactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatcgtctgatttgaggtaaattttcgag 163198  T
Q  201 gacgaaaattctataacttgtg 222  Q
    |||||||||||||||| |||||    
T  163199 gacgaaaattctataagttgtg 163220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17738795 - 17738574
Alignment:
Q  1 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17738795 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattggatcgcaat 17738696  T
Q  101 gcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgag 200  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17738695 gcgagaaacctaagaagactcaaactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatcgtctgatttgaggtaaattttcgag 17738596  T
Q  201 gacgaaaattctataacttgtg 222  Q
    ||||| |||||||||| |||||    
T  17738595 gacgataattctataagttgtg 17738574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19040115 - 19039894
Alignment:
Q  1 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  19040115 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattggttctcaat 19040016  T
Q  101 gcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgag 200  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19040015 gcgagaaacctaagaagactcaaactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatcgtctgatttgaggtaaattttcgag 19039916  T
Q  201 gacgaaaattctataacttgtg 222  Q
    ||||| |||||||||| |||||    
T  19039915 gacgataattctataagttgtg 19039894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 13028614 - 13028790
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||| ||||| ||| ||||||||||||| ||||| || || || |||||| | ||||| ||| |||| ||||||||| |||   |  |||| | ||| |    
T  13028614 tgtaaccatgaggatattgtgtgtttcaactgcaaagaggaaggacatattagttcgcagtgcaagaagcctaagaaggctcaggcaggtggaaaggtgt 13028713  T
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattctataa 216  Q
    ||||||||  |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  13028714 ttgctttatttggtactcagacagcggatgaggatcgtctgatctgaggtaaattttcgaggacgaaaattctataa 13028790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 15262494 - 15262357
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||| |||| ||||| ||| | |  |||| |||||| |    
T  15262494 gagtgtaagcatgatgatgttgtgtgtttcaattgcaatgaggaaggacatattgggtcgcaatgcaagaagcctaaaaaggcgcagactactgggagag 15262395  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||||||||||||||| ||| ||||||    
T  15262394 tttttgctttgactggtactcagacagagaacgaggat 15262357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 2037186 - 2037342
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    |||| |||||||||||  |||| || |||||| || | ||||| ||| |||| |||||||||  ||   | ||||| || || |||||||||||||||||    
T  2037186 ttgtttgtttcaattgtgatgaggaaggtcatcttagttcgcagtgcaagaagcctaagaagggtcaggcgagtggaagagtgtttgctttagctggtac 2037285  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  2037286 tcagacagcgaatgaggatcgtctgatctgaggtatattttcgaggacgaaaattct 2037342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 2040927 - 2041083
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    |||| |||||||||||  |||| || |||||| || | ||||| ||| |||| |||||||||  ||   | ||||| || || |||||||||||||||||    
T  2040927 ttgtttgtttcaattgtgatgaggaaggtcatcttagttcgcagtgcaagaagcctaagaagggtcaggcgagtggaagagtgtttgctttagctggtac 2041026  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  2041027 tcagacagcgaatgaggatcgtctgatctgaggtatattttcgaggacgaaaattct 2041083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 14039601 - 14039445
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    |||| |||||||||||  |||| || |||||| || | ||||| ||| |||| |||||||||  ||   | ||||| || || |||||||||||||||||    
T  14039601 ttgtttgtttcaattgtgatgaggaaggtcatcttagttcgcagtgcaagaagcctaagaagggtcaggcgagtggaagagtgtttgctttagctggtac 14039502  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  14039501 tcagacagcgaatgaggatcgtctgatctgaggtatattttcgaggacgaaaattct 14039445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 19727621 - 19727471
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||  |||| ||||||||| | |  |||| ||| || || |    
T  19727621 tgtaagcatgatgatgttgtatgtttcaattgcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaaggcacagactactggaagagttt 19727522  T
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggta 190  Q
    |||||||  ||||||| ||||||| |||||||||| || ||||| ||||||    
T  19727521 ttgctttgactggtacgcagacagagaatgaggatcgtttgattagaggta 19727471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 12843369 - 12843506
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    ||||||||  |||| ||||||||||  || |||||||||||||| ||||||||||| ||||||||| |||| ||||||||| | |  |||| |||||| |    
T  12843369 gagtgtaaagatgatgatgttgtgttctttaattgcaatgaagaaggtcatattggttcgcaatgcaagaatcctaagaagtcgcaaactactgggagag 12843468  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | || |||||  ||||||||||||||| ||||||||||    
T  12843469 ttttagctttgactggtactcagacagagaatgaggat 12843506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 15008855 - 15009011
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    |||| |||||||| ||  ||||||| || ||| || | ||||| ||| |||| ||||||||| |||   | ||||| ||||| |||||||||||||||||    
T  15008855 ttgtttgtttcaaatgtgatgaagaaggccatcttagttcgcagtgcaagaatcctaagaaggctcaagcaagtggaagggtgtttgctttagctggtac 15008954  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    |||||||||  ||| |||| ||| ||| || |||| |||||||||||||||||||||    
T  15008955 tcagacagcagatggggatcgtcggatctggggtatattttcgaggacgaaaattct 15009011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 12508788 - 12508998
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    |||||||||||| ||||||||||  ||| | || || |||||||| ||| | || ||||| || ||   |||||| ||||| ||||| || || ||  ||    
T  12508788 ccgttgtggcaggaaaggacatataattgcggattgcaagcatgaggatatagtttgttttaactgtggtgaagaaggtcacattggttctcagtgtaag 12508887  T
Q  106 aaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacga 205  Q
    ||||||| |||  |||   || |||||| ||| ||||||||| ||||||| ||||||||||||||||||  ||| || ||||||| |||||  |||| ||    
T  12508888 aaacctaggaaagctcagtctggtgggaaggtgtttgctttaactggtacacagacagcgaatgaggatcatctaatctgaggtacattttttaggatga 12508987  T
Q  206 aaattctataa 216  Q
    |||||||||||    
T  12508988 aaattctataa 12508998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 15013112 - 15013166
Alignment:
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtct 179  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  15013112 ctagtgggaaggtgtttgctttagctggtactcagacagcgaatgaggatcgtct 15013166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 15446458 - 15446514
Alignment:
Q  160 acagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||| ||| |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  15446458 acagcggatggggatcgtctgatctgaggtaaattttcaaggacgaaaattctataa 15446514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 15065929 - 15065798
Alignment:
Q  43 aagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttg 142  Q
    |||||| | ||| ||||||  ||||||||||| ||||||||||||||||| || || ||| || | ||||||||| | |  ||||  || ||||| ||||    
T  15065929 aagcataatgatattgtgttcttcaattgcaaagaagagggtcatattggttctcagtgcaagcagcctaagaaggcgccgactacaggtagggtttttg 15065830  T
Q  143 ctttagctggtactcagacagcgaatgaggat 174  Q
    ||||  ||||||||||||| | ||||||||||    
T  15065829 ctttgactggtactcagaccgagaatgaggat 15065798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 16804232 - 16804350
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||  |||||||||||||||||||| || |||||| || | ||||||||| | | |||||  ||  | || |||||| | | ||||||    
T  16804232 ttgtgtgcttcaattttaatgaagagggtcatattggttcccaatgcaagcagcctaagaagtcgcctactacgggtcgagtttttgctctggatggtac 16804331  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  16804332 tcagacagagaatgaggat 16804350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 23415075 - 23415134
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 115  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||| || | |||||||    
T  23415075 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatgcaagcagcctaaga 23415134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12447 - 12232
Alignment:
Q  1 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12447 tgtacccgttgtggcagaaaaggacatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 12348  T
Q  101 gcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgag 200  Q
    |||||||||||||||||||||   ||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  12347 gcgagaaacctaagaagactcaggctagtggaagggtatttgctttaactggtactcaaacagcgaatgaggatcgtccgatctgaggtaaattttcgag 12248  T
Q  201 gacgaaaattctataa 216  Q
    ||||||||||||||||    
T  12247 gacgaaaattctataa 12232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 242 - 27
Alignment:
Q  1 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  242 tgtacccgttgtggcagaaaaggacatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 143  T
Q  101 gcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgag 200  Q
    |||||||||||||||||||||   ||||||| ||||||||||||||| |||| |||||||||| |||||||||| ||||||| | |||||||||||||||    
T  142 gcgagaaacctaagaagactcaggctagtggaagggtatttgctttaactggaactcagacagtgaatgaggatcgtctgatcttaggtaaattttcgag 43  T
Q  201 gacgaaaattctataa 216  Q
    ||| ||||||||||||    
T  42 gacaaaaattctataa 27  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 20921738 - 20921523
Alignment:
Q  1 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| |||||    
T  20921738 tgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatattgtgtgttttaaatgcaatgaagagggtcatattgggttgcaat 20921639  T
Q  101 gcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgag 200  Q
    | |||||||||||||||||||   ||||||| |||||||||||||||  ||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  20921638 gtgagaaacctaagaagactcaggctagtggaagggtatttgctttaattggaactcagacagcgaatgaggatcgtctgatctgaggtaaattttcgag 20921539  T
Q  201 gacgaaaattctataa 216  Q
    ||||||||||||||||    
T  20921538 gacgaaaattctataa 20921523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 21045221 - 21045369
Alignment:
Q  35 cagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggag 134  Q
    |||| |||||||| || ||||| ||||||||||||| ||||||||| ||||||||||  || |||||||||||||||||||||||||  |||||||| ||    
T  21045221 cagaatgtaagcacgatgatgtggtgtgtttcaattacaatgaagaaggtcatattgtttcacaatgcgagaaacctaagaagactcagactagtggaag 21045320  T
Q  135 ggtatttgctttagctggtactcagacagcgaatgaggatagtctgatt 183  Q
     || ||||||||  ||||||| || |||| |||||||||| || |||||    
T  21045321 agtgtttgctttgactggtacgcaaacagagaatgaggatcgtttgatt 21045369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 22117025 - 22116891
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| || |||||| ||||||| ||||||||||  |||| |||||| || |    
T  22117025 tgtaagcatgatgatgttgtatgtttcaattgcaatgaggaaggtcatattggatcccaatgcaagaaaccgaagaagactcagactactgggagagttt 22116926  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||   |||||| ||||||| ||||||||||    
T  22116925 ttgctttgaatggtacgcagacagagaatgaggat 22116891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 16379385 - 16379217
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    ||||||||| |  |||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||  ||||||||  ||    
T  16379385 ccgttgtggtaagaaaggacatacgcttccagagtgtaagcatgatgatattgtgtgtttcaattgcaatgaagagggtcacattgtttcgcaatgtaag 16379286  T
Q  106 aaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    || || |||||| |||  |||| ||| || || ||||||||  ||||||| || |||| ||| ||||||    
T  16379285 aagccaaagaaggctcagactactggtagagtgtttgctttgactggtacgcaaacagagaacgaggat 16379217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 24784975 - 24785093
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||||||||||||||||||||||||||| ||||| || || ||| || | ||||||||| | |  |||| ||| ||||| ||||||||  |||||||    
T  24784975 ttgtgtgtttcaattgcaatgaagagggtcacattggttctcagtgcaagcagcctaagaaggcgccgactactggtagggtttttgctttgactggtac 24785074  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  24785075 tcagacagagaatgaggat 24785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 21176674 - 21176551
Alignment:
Q  51 agatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagct 150  Q
    |||| ||||||| ||||||||||||||||||||||||||||| || |||||| || | ||||||| ||| | |||||  |   | || |||||| | |||    
T  21176674 agatattgtgtgcttcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaagaggacgcctactacggatcgagtctttgctctggct 21176575  T
Q  151 ggtactcagacagcgaatgaggat 174  Q
    ||||||||||||| ||||||||||    
T  21176574 ggtactcagacagagaatgaggat 21176551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 21228674 - 21228792
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| || | ||||||| | | | ||| |  ||  | || |||||||| ||||||||    
T  21228674 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgcaagcagcctaagagggcgcctacaacgggtcgagtttttgctttggctggtac 21228773  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||| | ||||||||||    
T  21228774 tcagacggagaatgaggat 21228792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 22435851 - 22435969
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||| ||||||||||| ||||| || || ||| || ||||||||| | | |  |||| ||| ||||| |||||| | ||||||||    
T  22435851 ttgtgtgcttcaattgcaaggaagagggtcacattggttctcagtgcaagcaacctaagagggcgccgactactggtagggtttttgctctggctggtac 22435950  T
Q  156 tcagacagcgaatgaggat 174  Q
      |||||| ||||||||||    
T  22435951 agagacagagaatgaggat 22435969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 22401825 - 22401715
Alignment:
Q  64 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacag 163  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||||| | |   ||| ||| || || ||||||||  ||||||| |||||||    
T  22401825 ttcaattgtaatgaagagggtcacattggttcgcagtgcaagaagcctaagaaggcgccggctactggtagagtttttgctttgactggtacacagacag 22401726  T
Q  164 cgaatgaggat 174  Q
     ||| ||||||    
T  22401725 agaacgaggat 22401715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 22496374 - 22496492
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||| ||| | ||||| ||  || | ||||||||| | |  |||| ||| || || || |||||  |||||||    
T  22496374 ttgtgtgcttcaattgcaatgaagagggtcacattagttcgcagtgtaagcagcctaagaaggcgccgactactggtagagttttcgctttgactggtac 22496473  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||| | ||||||||||    
T  22496474 tcagaccgagaatgaggat 22496492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 21752307 - 21752227
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    ||||| || ||||| ||| ||||||||||||||||||| || || ||||| ||||| || || ||| |||| |||||||||    
T  21752307 gagtgcaaacatgatgatattgtgtgtttcaattgcaacgaggaaggtcacattggttcacagtgcaagaagcctaagaag 21752227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 3274509 - 3274298
Alignment:
Q  5 cccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcga 104  Q
    ||||||||||||||||||| ||||  ||| |||| || |||||||||||||| ||||||||||| || |||||||| ||||| || || || || ||  |    
T  3274509 cccgttgtggcagaaaagggcatataattgcagattgcaagcatgaagatgtggtgtgtttcaactgtaatgaagaaggtcacataggttctcagtgtaa 3274410  T
Q  105 gaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacg 204  Q
    |||||||| |||  |||   ||||||| | ||| ||||||||| ||||||||||||||||| ||| |||| |||| || ||||||| |||||||||||||    
T  3274409 gaaacctaggaaagctcagtctagtggaaaggtgtttgctttatctggtactcagacagcggatgcggatcgtctaatctgaggtacattttcgaggacg 3274310  T
Q  205 aaaattctataa 216  Q
    ||||||||||||    
T  3274309 aaaattctataa 3274298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 22245500 - 22245638
Alignment:
Q  52 gatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctg 151  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||  |||||||| || || ||||||||  |||    
T  22245500 gatgtggtgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcaaactagtggtagagtgtttgctttgactg 22245599  T
Q  152 gtactcagacagcgaatgaggatagtctgatttgaggta 190  Q
    |||| || |||| |||||||||| || ||||| ||||||    
T  22245600 gtacgcaaacagagaatgaggatcgtttgattagaggta 22245638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 22245918 - 22246056
Alignment:
Q  52 gatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctg 151  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||  |||||||| || || ||||||||  |||    
T  22245918 gatgtggtgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcaaactagtggtagagtgtttgctttgactg 22246017  T
Q  152 gtactcagacagcgaatgaggatagtctgatttgaggta 190  Q
    |||| || |||| |||||||||| || ||||| ||||||    
T  22246018 gtacgcaaacagagaatgaggatcgtttgattagaggta 22246056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 22990356 - 22990219
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||||||||| |||||| | ||||||||||||||||| || |  ||||||||||| |||||| |||| ||||||||| | |  |||| |||||| |    
T  22990356 gagtgtaagcatgatgatgttatctgtttcaattgcaatgaggaagaacatattgggtcacaatgcaagaagcctaagaaggcgcagactactgggagag 22990257  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||||||| ||||||| ||||||||||    
T  22990256 tttttgctttgactggtacgcagacagagaatgaggat 22990219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 6607041 - 6607114
Alignment:
Q  139 tttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||||||||||| ||| |||| ||| ||| ||||||| |||||||||||||||||||||    
T  6607041 tttgctttagctggtactcagacagcggatggggatcgtcggatctgaggtatattttcgaggacgaaaattct 6607114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 22523821 - 22523703
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||||||||| ||| ||||||| |||||||||||||| || ||||| ||||| ||||||||| |||| ||||||||| | |  |||| |||||| |    
T  22523821 gagtgtaagcatgatgatattgtgtgcttcaattgcaatgaggaaggtcacattggttcgcaatgcaagaagcctaagaaggcgcaaactattgggagag 22523722  T
Q  137 tatttgctttagctggtac 155  Q
    | ||||||||  |||||||    
T  22523721 tctttgctttgactggtac 22523703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 22421333 - 22421499
Alignment:
Q  7 cgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgaga 106  Q
    ||||||||||  || ||||||||  || | |||||||| ||||| ||| ||||||| || ||||||||||| || || |||||||||||||||||| |||    
T  22421333 cgttgtggcaagaagggacatacacttgctgagtgtaaacatgatgatattgtgtgctttaattgcaatgaggaaggacatattgggtcgcaatgcaaga 22421432  T
Q  107 aacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||| | |  |||| || ||| || ||||||| | |||||||| |||||| ||| ||||||    
T  22421433 agcctaagaaggcgcagactactgagagagtgtttgcttga-ctggtacttagacagagaacgaggat 22421499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 21164027 - 21164145
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||| ||||| || |||||| || ||||||||||| | |  |||| ||| || || || |||||  |||||||    
T  21164027 ttgtgtgcttcaattgcaatgaagagggtcacattggttctcaatgcaagcaacctaagaaggcgccaactactggtagagttttcgctttgactggtac 21164126  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||| | ||||||||||    
T  21164127 tcagaccgagaatgaggat 21164145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 30310633 - 30310751
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||  || | || |||||| | | |||||  ||  | || |||||| ||||||||||    
T  30310633 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatgtaagcagccgaagaaggcgcctactacgggtcgagtttttgctctagctggtac 30310732  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  30310733 tcagacagagaatgaggat 30310751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 15536674 - 15536557
Alignment:
Q  57 tgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtact 156  Q
    |||||| |||||||| |||||||||||||||||||| || |||||| || | || |||| | | | |||||  ||  | || |||||| | |||||||||    
T  15536674 tgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgcaagcagccgaagagggcgcctactacgggtcgagtttttgctcttgctggtact 15536575  T
Q  157 cagacagcgaatgaggat 174  Q
    ||||||| ||||||||||    
T  15536574 cagacagagaatgaggat 15536557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 21391358 - 21391468
Alignment:
Q  64 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacag 163  Q
    |||||||| |||||||||||||| ||||| ||  | ||| |||| ||||||||| | |  |||| ||| ||||| ||||||||  ||||||| |||||||    
T  21391358 ttcaattgtaatgaagagggtcacattggttcatagtgcaagaagcctaagaaggcgccgactactggtagggtctttgctttgactggtacacagacag 21391457  T
Q  164 cgaatgaggat 174  Q
     ||| ||||||    
T  21391458 agaacgaggat 21391468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 21780684 - 21780794
Alignment:
Q  64 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacag 163  Q
    |||||||| |||||||||||||| ||||| ||  | ||| |||| ||||||||| | |  |||| ||| ||||| ||||||||  ||||||| |||||||    
T  21780684 ttcaattgtaatgaagagggtcacattggttcatagtgcaagaagcctaagaaggcgccgactactggtagggtctttgctttgactggtacacagacag 21780783  T
Q  164 cgaatgaggat 174  Q
     ||| ||||||    
T  21780784 agaacgaggat 21780794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 23948706 - 23948673
Alignment:
Q  183 ttgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||||| |||||||||||||||||||||||||    
T  23948706 ttgaggtacattttcgaggacgaaaattctataa 23948673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 18660060 - 18659849
Alignment:
Q  5 cccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcga 104  Q
    ||||||||||||||||||| ||||| ||| |||| || ||||||||| |||| ||||||||||| || |||||||| ||||| ||||| || || ||  |    
T  18660060 cccgttgtggcagaaaagggcatacaattgcagattgcaagcatgaaaatgtggtgtgtttcaactgtaatgaagaaggtcacattggttctcagtgtaa 18659961  T
Q  105 gaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacg 204  Q
    |||||||| |||  |||   ||||||||| ||| ||||||||| |||||||||||||| || ||| | || ||||||| | ||||| |||||||||||||    
T  18659960 gaaacctaggaaagctcagtctagtgggaaggtgtttgctttatctggtactcagacaacggatgggaatcgtctgatctaaggtacattttcgaggacg 18659861  T
Q  205 aaaattctataa 216  Q
    ||||||||||||    
T  18659860 aaaattctataa 18659849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 25958928 - 25959104
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||||||| | ||||||||||| ||||||||||| || || ||||| ||||| ||| |||| ||||||||| |||   |  |||| || || |    
T  25958928 tgtaagcatgaagatatagtgtgtttcaactgcaatgaagaaggacacattggttcgcagtgcaagaagcctaagaagcctcaggcaggtggaagagtgt 25959027  T
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||||| |||||||| |||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  25959028 ttgctttatctggtacttagacagcggatgtggatcgtctgatatgaggtaaattttcgaggacgaaaattctataa 25959104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 18182529 - 18182643
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    ||||||||| |  |||||||||||| ||||| | ||||||||||| |||||||| || || || |||||||||||||||||||||||||| |||||| ||    
T  18182529 ccgttgtggtaagaaaggacatacgcttacataatgtaagcatgatgatgttgtatgctttaactgcaatgaagagggtcatattgggtcacaatgcaag 18182628  T
Q  106 aaacctaagaagact 120  Q
    ||| | |||||||||    
T  18182629 aaatcaaagaagact 18182643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 23084966 - 23085077
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    ||||||||| |  ||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||||||| ||||||||| ||||| ||| ||    
T  23084966 ccgttgtggtaagaaagggcatactattacagaatgtaagcatgatgatgttgtgtgttttaattgaaatgaagaggttcatattggttcgcagtgcaag 23085065  T
Q  106 aaacctaagaag 117  Q
    || |||| ||||    
T  23085066 aagcctatgaag 23085077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 23081529 - 23081395
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||| ||||| ||| ||||||||||||||||||||||  | ||||| ||||| ||||| | | |||| ||||||||| | |  |||| |||||| || |    
T  23081529 tgtaaacatgatgatattgtgtgtttcaattgcaatgagaaaggtcacattggttcgcagtacaagaagcctaagaaggcgcagactactgggagagttt 23081430  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||  ||| ||||||||||| ||||||||||    
T  23081429 ttgctttgactgatactcagacagagaatgaggat 23081395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 18326001 - 18325914
Alignment:
Q  5 cccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgg 92  Q
    |||||||||| |||||||||||| | ||| |||| || |||||||| ||||| ||||||||||| || |||||||| ||||| |||||    
T  18326001 cccgttgtggtagaaaaggacatgcaattgcagattgcaagcatgatgatgtggtgtgtttcaactgtaatgaagaaggtcacattgg 18325914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 30678190 - 30678333
Alignment:
Q  31 attacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtg 130  Q
    ||||||||||| |||||||| ||| |  |||||||||| || |||||||| ||||| ||||| ||||| ||| |||| ||||||||| |||   ||||||    
T  30678190 attacagagtgcaagcatgatgatatgatgtgtttcaactgtaatgaagaaggtcacattggttcgcagtgcaagaagcctaagaaggctcaggctagtg 30678289  T
Q  131 ggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||     ||||||||  ||||||| || |||| ||||||||||    
T  30678290 ggaaaacgtttgctttgactggtacacaaacagtgaatgaggat 30678333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 25756806 - 25756924
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||||||||| |||||||||||||| || |||||| |  | ||||||| | | | |||||  ||  | || |||||| | ||||||||    
T  25756806 ttgtgtgcttcaattgcaatgaggagggtcatattggttcccaatgcaaacagcctaagagggcgcctactacgggtcgagtttttgctctggctggtac 25756905  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  25756906 tcagacagagaatgaggat 25756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 19867777 - 19867735
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgca 98  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||    
T  19867777 ttgtgtgcttcaattgcaatgaagagggtcacattggttcgca 19867735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 1424 - 1631
Alignment:
Q  9 ttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaa 108  Q
    ||||||||||||||| ||||| ||| |||| || |||||||||||||| ||||||||||| || |||||||| ||||| || || || || ||  |||||    
T  1424 ttgtggcagaaaagggcatacaattgcagattgcaagcatgaagatgtggtgtgtttcaactgtaatgaagaaggtcacataggttctcagtgtaagaaa 1523  T
Q  109 cctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaa 208  Q
    |||| |||  |||   ||||||| | ||| ||| ||||| ||||||||||||||||| ||| |||| |||  || ||||||| |||||||||||||||||    
T  1524 cctaggaaagctcaatctagtggaaaggtgtttactttatctggtactcagacagcggatggggatcgtcgaatctgaggtatattttcgaggacgaaaa 1623  T
Q  209 ttctataa 216  Q
    ||||||||    
T  1624 ttctataa 1631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 13512 - 13646
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    |||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||  |||||||| || || |    
T  13512 tgtatgcatgatgatgtggtgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcagactagtggtagagtgt 13611  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||  ||||||| || |||| ||||||||||    
T  13612 ttgctttgactggtacacaaacagagaatgaggat 13646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 6384 - 6234
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||| || || |    
T  6384 tgtaagcatgatgatgttgtatgttttaactgcaatgaagaaggtcatattgggtcgcaatgcaagaaacctaagaagactcagactagtggaagagtgt 6285  T
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggta 190  Q
    ||| |||  ||||||| || |||| |||||||||| || ||||| ||||||    
T  6284 ttggtttgactggtacgcaaacagagaatgaggatcgtttgattagaggta 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 5186 - 5052
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||   ||||||| || || |    
T  5186 tgtaagcatgatgatgttgtatgtttaaattgcaatgaagaaggtcatattgggtcgcaatgcaagaaacctaagaagactcagtctagtggaagagttt 5087  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    || ||||  ||||||| ||||||| ||||||||||    
T  5086 tttctttgactggtacgcagacagagaatgaggat 5052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 2003 - 1971
Alignment:
Q  184 tgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||||||||||||||||||||||| ||||||    
T  2003 tgaggtaaattttcgaggacgaaaatcctataa 1971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 7147 - 7010
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||  |||| ||||||||| | |  |||| |||||| |    
T  7147 gagtgtaagcatgatgatgttgtgtgtttcaattgcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaaggcacagactactgggagag 7048  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||||||||||||||| ||||||||||    
T  7047 tttttgctttgactggtactcagacagagaatgaggat 7010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 14277 - 14140
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||  |||| ||||||||| | |  |||| |||||| |    
T  14277 gagtgtaagcatgatgatgttgtgtgtttcaattgcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaaggcacagactactgggagag 14178  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||||||||||||||| ||||||||||    
T  14177 tttttgctttgactggtactcagacagagaatgaggat 14140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 216438 - 216587
Alignment:
Q  25 catacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgta 124  Q
    |||||| |||| || ||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| ||||||||| | |  |    
T  216438 catacgcttactgaatgtaagcatgatgatgttgtgtgttttaactgcaatgaagaaggtcatattgggtcgcaatgcaagaagcctaagaaggcgcaga 216537  T
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    ||| |||||| || ||||||||  ||||||| ||||||| ||||||||||    
T  216538 ctactgggagagtttttgctttgactggtacgcagacagagaatgaggat 216587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 36102 - 35926
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||||||  ||||||||| ||| |||||||||||||| || ||||| ||||| ||| || | ||||||||| ||||  | | ||| |  || |    
T  36102 tgtaagcatgaagacattgtgtgttacaactgcaatgaagagggacacattggttcgcagtgcaaggagcctaagaaggctcgggcaactggaaaagtgt 36003  T
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||||| ||| ||||||||||||| |||||||| || |||| | |||||||||||||||||||||||||||||||    
T  36002 ttgctttatctgttactcagacagcggatgaggatcgtttgatctaaggtaaattttcgaggacgaaaattctataa 35926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 18150 - 18010
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    ||||||||| |  |||||||||||| ||||||||||||||||||| |||||||| ||||| || || |||||||| |||||||||| |||||||||| ||    
T  18150 ccgttgtggtaagaaaggacatacgcttacagagtgtaagcatgatgatgttgtatgttttaactgtaatgaagaaggtcatattgagtcgcaatgcaag 18051  T
Q  106 aaacctaagaagactcgtactagtgggagggtatttgcttt 146  Q
    ||||||||||||||||  || ||||| || || ||||||||    
T  18050 aaacctaagaagactcaaaccagtggaagagtgtttgcttt 18010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 21631596 - 21631744
Alignment:
Q  25 catacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgta 124  Q
    ||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||| |||| ||||||||| |||  |    
T  21631596 catactattacagaatgtaagcatgatgatgtggtgtgtttcaactgcaatgaagaaggtcatattggttcgcagtgcaagaagcctaagaaggctcaga 21631695  T
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgagga 173  Q
    |||||||||  || ||||||||  ||||||| ||||||| |||||||||    
T  21631696 ctagtgggaaagtgtttgctttgactggtacacagacagtgaatgagga 21631744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 16258264 - 16258420
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    |||| |||||||||||  |||| || |||||| || | ||||| ||| |||| |||||||||  ||   | ||||| || || |||||||||||||||||    
T  16258264 ttgtttgtttcaattgtgatgaggaaggtcatcttagttcgcagtgcaagaagcctaagaagggtcaggcgagtggaagagtgtttgctttagctggtac 16258363  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  16258364 tcagacagcgaatgaggatcgtctgatctgaggtatattttcgaggacgaaaattct 16258420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 22591983 - 22592139
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    |||| |||||||||||  |||| || |||||| || | ||||| ||| |||| |||||||||  ||   | ||||| || || |||||||||||||||||    
T  22591983 ttgtttgtttcaattgtgatgaggaaggtcatcttagttcgcagtgcaagaagcctaagaagggtcaggcgagtggaagagtgtttgctttagctggtac 22592082  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  22592083 tcagacagcgaatgaggatcgtctgatctgaggtatattttcgaggacgaaaattct 22592139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 22595538 - 22595694
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    |||| |||||||||||  |||| || |||||| || | ||||| ||| |||| |||||||||  ||   | ||||| || || |||||||||||||||||    
T  22595538 ttgtttgtttcaattgtgatgaggaaggtcatcttagttcgcagtgcaagaagcctaagaagggtcaggcgagtggaagagtgtttgctttagctggtac 22595637  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  22595638 tcagacagcgaatgaggatcgtctgatctgaggtatattttcgaggacgaaaattct 22595694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 21332195 - 21332332
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||||||||||||||||||||||||||  | ||||| ||||| ||||||||| |||| |||||||||   |  |||| |||||| |    
T  21332195 gagtgtaaacatgatgatgttgtgtgtttcaattgcaatgagaaaggtcacattggttcgcaatgcaagaagcctaagaaggtgcagactactgggagag 21332294  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  |||||||||||| || ||||||||||    
T  21332295 tttttgctttgactggtactcagatagagaatgaggat 21332332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 23669734 - 23669619
Alignment:
Q  94 tcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaat 193  Q
    ||||| ||| |||| ||||||||| |||   | ||||| ||||| ||||||||||||||||| ||||||||  ||| |||| ||| ||| ||||||| ||    
T  23669734 tcgcagtgcaagaatcctaagaaggctcagtcaagtggaagggtgtttgctttagctggtacgcagacagcagatggggatcgtcggatctgaggtatat 23669635  T
Q  194 tttcgaggacgaaaat 209  Q
    ||||||||||||||||    
T  23669634 tttcgaggacgaaaat 23669619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 23474369 - 23474308
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatg 101  Q
    |||||||||||  |||||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  23474369 tgtaagcatgattatgttgtgtgtttcaattgcaatgaagaaggttatattggttcgcaatg 23474308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 26735936 - 26736073
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| |||| ||||||||||||||||||||| || ||||| ||||| | ||||| | |||| ||||||||| | |  |||| | | || |    
T  26735936 gagtgtaaacatgatgatgctgtgtgtttcaattgcaatgaggaaggtcacattggtttgcaatccaagaagcctaagaaggcgcagactactagtagag 26736035  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||||||||||||||| ||| ||||||    
T  26736036 tttttgctttgactggtactcagacagagaacgaggat 26736073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 43122524 - 43122451
Alignment:
Q  139 tttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||||||||||||||||||||||||   || |||| ||| ||| ||||||| |||||||||||||||||||||    
T  43122524 tttgctttagctggtactcagacagcagttggggatcgtcggatctgaggtatattttcgaggacgaaaattct 43122451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 23526209 - 23526148
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    ||||||| ||||||||||||||||||||||||||||| || || ||| || | |||||||||    
T  23526209 ttgtgtgcttcaattgcaatgaagagggtcatattggttctcagtgcaagcagcctaagaag 23526148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 21410342 - 21410166
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    |||||||||||||||||||||||| ||| |||| || |||||||| ||| | || || || || ||   |||||| || |||||| |  | || ||  ||    
T  21410342 ccgttgtggcagaaaaggacatacaattgcagattgcaagcatgatgatatagtttgctttaaatgtggtgaagaaggacatattagccctcagtgtaag 21410243  T
Q  106 aaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgat 182  Q
    |||||||| ||  |||   ||||| | | ||| |||||||||||||||||| |||||| |||||||||| |||||||    
T  21410242 aaacctaataaagctcagtctagttgcaaggtgtttgctttagctggtacttagacagagaatgaggatcgtctgat 21410166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 23461142 - 23461011
Alignment:
Q  43 aagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttg 142  Q
    |||||||  ||| ||||||||||| ||||||| ||||||||| ||||||| || || ||| |  ||||||||||| | |  |||| ||| || || ||||    
T  23461142 aagcatggtgatattgtgtgtttcgattgcaaggaagagggtaatattggttcccagtgcaaacaacctaagaaggcgccgactactggtagagtttttg 23461043  T
Q  143 ctttagctggtactcagacagcgaatgaggat 174  Q
    ||||  |||||||| |||| | ||||||||||    
T  23461042 ctttgactggtacttagaccgagaatgaggat 23461011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 25429571 - 25429518
Alignment:
Q  64 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    |||||||| |||||||||||||| ||||| || |||||| |||| |||||||||    
T  25429571 ttcaattgtaatgaagagggtcacattggttcacaatgcaagaagcctaagaag 25429518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 14697343 - 14697200
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    |||||||| || |||||  |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||  |||||||| || || |    
T  14697343 tgtaagcacgatgatgtgctgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcagactagtggtagagtgt 14697244  T
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatt 183  Q
    |||||||  ||||||| || |||| |||||||||| || |||||    
T  14697243 ttgctttgactggtacgcaaacagagaatgaggatcgtttgatt 14697200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 13879287 - 13879179
Alignment:
Q  104 agaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggac 203  Q
    |||| |||||||||||||   | ||||| ||||| ||||||||||||||||||||||||||  ||| |||| ||||||| ||||||| ||||||||||||    
T  13879287 agaagcctaagaagactcaagcaagtggaagggtgtttgctttagctggtactcagacagcagatggggatcgtctgatctgaggtacattttcgaggac 13879188  T
Q  204 gaaaattct 212  Q
    |||||||||    
T  13879187 gaaaattct 13879179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 16219433 - 16219296
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||| |||| ||| ||||  | |  |||| |||||| |    
T  16219433 gagtgtaaacatgatgatgttgtgtgctttaattgcaatgaagaaggtcatattggttcgcaatgcaagaagcctgagaaagcgccgactactgggagag 16219334  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  |||||||| ||||||  |||||||||    
T  16219333 tttttgctttgactggtacttagacagaaaatgaggat 16219296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 16222753 - 16222616
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||| |||| ||| ||||  | |  |||| |||||| |    
T  16222753 gagtgtaaacatgatgatgttgtgtgctttaattgcaatgaagaaggtcatattggttcgcaatgcaagaagcctgagaaagcgccgactactgggagag 16222654  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  |||||||| ||||||  |||||||||    
T  16222653 tttttgctttgactggtacttagacagaaaatgaggat 16222616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 13513576 - 13513458
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| || | ||||||| |   | ||||| |||  | || |||||| | ||||||||    
T  13513576 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgcaagcagcctaagagggtgcctactactggtcgagtttttgctctggctggtac 13513477  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  13513476 tcagacagagaatgaggat 13513458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 14162715 - 14162654
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgca 98  Q
    |||||||||||||||||||||||||| || ||||||||||| || ||||| ||||| |||||    
T  14162715 gagtgtaagcatgaagatgttgtgtgctttaattgcaatgaggaaggtcacattggttcgca 14162654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 14652058 - 14652026
Alignment:
Q  184 tgaggtaaattttcgaggacgaaaattctataa 216  Q
    ||||||| |||||||||||||||||||||||||    
T  14652058 tgaggtacattttcgaggacgaaaattctataa 14652026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 14851628 - 14851660
Alignment:
Q  184 tgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||||||||||||||||||||||||| ||||    
T  14851628 tgaggtaaattttcgaggacgaaaattcaataa 14851660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 5393 - 5237
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    ||||||||| |  ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||| ||    
T  5393 ccgttgtggtaagaaagggcatactattacagaatgtaagcatgatgatgtggtgtgtttcaaatgcaatgaagaaggtcatattggttcgcagtgcaag 5294  T
Q  106 aaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagaca 162  Q
    || ||||||||| |||  ||||||||||  || ||||||||  ||||||| ||||||    
T  5293 aagcctaagaaggctcaaactagtgggaaagtgtttgctttgactggtacgcagaca 5237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 441957 - 441846
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    ||||||||| |  ||||| ||||| |||||||| ||||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||| ||    
T  441957 ccgttgtggtaagaaagggcatactattacagaatgtaaacatgatgatgttgtgtgttttaactgcaatgaagagggtcatattggttcgcaatgcaag 441858  T
Q  106 aaacctaagaag 117  Q
    || |||||||||    
T  441857 aagcctaagaag 441846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 496291 - 496157
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| ||||| || |||||||| || ||| ||||||| || |||||  |||| ||||||||| | |  |||| | |||| || |    
T  496291 tgtaagcatgatgatgttgtatgttttaactgcaatgaggaaggttatattggttcacaatgtaagaagcctaagaaggcgcagactactcggagagttt 496192  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||  ||||||| ||||||| ||||||||||    
T  496191 ttgctttgactggtacgcagacagagaatgaggat 496157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 14299 - 14433
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||  |||| |||||||||   |  |||| |||||| || |    
T  14299 tgtaagcatgatgatgttgtatgtttcaattgcaatgaagaaggtcatattggttcgcaatgtaagaagcctaagaaggtgcagactactgggagagttt 14398  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||  ||||||| ||||||| ||||||||||    
T  14399 ttgctttgactggtacgcagacagagaatgaggat 14433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 15627776 - 15627622
Alignment:
Q  19 aaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaaga 118  Q
    ||||| ||||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||  || | |||||||||     
T  15627776 aaagggcatactattacagaatgcaagcatgatgatgtggtgtgtttcaactgcaatgaagagggtcatattggttcgcagtgaaagtagcctaagaagg 15627677  T
Q  119 ctcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgagga 173  Q
    |||  ||||||||||  || ||||||||  ||||||| || |||| |||||||||    
T  15627676 ctcaaactagtgggaaagtgtttgctttgactggtacgcaaacagtgaatgagga 15627622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 11984207 - 11984148
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 115  Q
    ||||||| ||||||| ||||||||||||||||||||| || |||||| || | |||||||    
T  11984207 ttgtgtgcttcaatttcaatgaagagggtcatattggttcccaatgcaagcagcctaaga 11984148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 9591579 - 9591533
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 102  Q
    ||||||| |||||||| |||||||||||||||||||| || ||||||    
T  9591579 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgc 9591533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 14042929 - 14042792
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||| | || || || ||||||||||| || ||||| ||||| ||||| ||| |||| ||||||||| | |  |||| |||||| |    
T  14042929 gagtgtaaacatgatgatatagtatgattaaattgcaatgaggaaggtcacattggttcgcagtgcaagaagcctaagaaggcacaaactactgggagag 14042830  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||| ||  ||||||||||||| | || |||||||    
T  14042829 tttttgcattgactggtactcagaccgagagtgaggat 14042792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 14352959 - 14352822
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||| | || || || ||||||||||| || ||||| ||||| ||||| ||| |||| ||||||||| | |  |||| |||||| |    
T  14352959 gagtgtaaacatgatgatatagtatgattaaattgcaatgaggaaggtcacattggttcgcagtgcaagaagcctaagaaggcacaaactactgggagag 14352860  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||| ||  ||||||||||||| | || |||||||    
T  14352859 tttttgcattgactggtactcagaccgagagtgaggat 14352822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 15203618 - 15203586
Alignment:
Q  184 tgaggtaaattttcgaggacgaaaattctataa 216  Q
    ||||||| |||||||||||||||||||||||||    
T  15203618 tgaggtacattttcgaggacgaaaattctataa 15203586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 23297 - 23446
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    |||||||||||  ||||| ||||| |||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| ||||| ||||||||| ||    
T  23297 ccgttgtggcaagaaaggtcatactattacagaatgtaagcatgatgacgttgtgtgttttaactgcaacgaagagggtcacattggttcgcaatgcaag 23396  T
Q  106 aaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    || ||||||||| | |  |||| |||||| || ||||||||  |||||||    
T  23397 aagcctaagaaggcgcagactactgggagagtttttgctttgactggtac 23446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 9369 - 9518
Alignment:
Q  25 catacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgta 124  Q
    ||||| |||||||| ||||||||| | |||||||||||||| || |||||||| || ||||||||||| || |||||| |||| ||||||||| | |  |    
T  9369 catactattacagaatgtaagcattatgatgttgtgtgttttaactgcaatgaggaaggtcatattggttcacaatgcaagaagcctaagaaggcgcaga 9468  T
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | | | |||| || ||||||||  ||||||| |||| || ||||||||||    
T  9469 ccactaggagagtgtttgctttgactggtacacagatagagaatgaggat 9518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 57644 - 57779
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||||||  |||| ||||||||| | |  |||| | |||| |    
T  57644 gagtgtaagcatgatgacgttgtgtgtttcaattgtaatgaagaaggtcatattggttcgcaatgtaagaagcctaagaaggcgcagactactaggagag 57743  T
Q  137 tatttgctttagctggtactcagacagcgaatgagg 172  Q
    | ||||||||  ||||||| ||||||| ||||||||    
T  57744 tttttgctttgactggtacgcagacagagaatgagg 57779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 26637 - 26470
Alignment:
Q  26 atacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtac 125  Q
    |||| |||||| | ||||||||||| || ||||||||||| |||||||||||||| ||||||||||| ||||  ||| |||| | ||||||| | |  ||    
T  26637 atactattacaaaatgtaagcatgatgaagttgtgtgttttaattgcaatgaagaaggtcatattggctcgctgtgcaagaagcataagaaggcgccgac 26538  T
Q  126 tagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaat 193  Q
     |||||||| || ||||||||  ||||||| ||||||| |||||||||| |  ||||| |||||||||    
T  26537 gagtgggagagtgtttgcttttactggtacgcagacagagaatgaggatcgattgattagaggtaaat 26470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 36869 - 36987
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||| ||||| ||  | ||| || ||||||||||| | |  |||| ||| || || ||||||||  || ||||    
T  36869 ttgtgtgcttcaattgcaatgaagagggtcacattggttcttagtgcaagcaacctaagaaggcgccgactactggtagagtttttgctttgactagtac 36968  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||| | ||||||||||    
T  36969 tcagaccgagaatgaggat 36987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 23566 - 23700
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| ||||| || |||||||| || ||||||||||| ||||||||  |||| ||||||||| | |  |||| |||||| || |    
T  23566 tgtaagcatgatgatgttgtatgttttaactgcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaaggcgcagactactgggagagttt 23665  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||  ||||||||||||||| ||||||||||    
T  23666 ttgctttgactggtactcagacagagaatgaggat 23700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 36869 - 36902
Alignment:
Q  183 ttgaggtaaattttcgaggacgaaaattctataa 216  Q
    ||||||||||||||||||||||||||| ||||||    
T  36869 ttgaggtaaattttcgaggacgaaaatcctataa 36902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 1894 - 2031
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| |||||||||||||| || |||||||| || ||||||||||| ||||||||| |||| | ||||||| | |  |||| |||||| |    
T  1894 gagtgtaaacatgacgatgttgtgtgttttaactgcaatgaggaaggtcatattggttcgcaatgcaagaagcgtaagaaggcgcagactactgggagag 1993  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||||||||||||| | ||||||||||    
T  1994 tttttgctttgactggtactcagactgagaatgaggat 2031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 4758 - 4895
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| |||||||||||||| || |||||||| || ||||||||||| ||||||||| |||| | ||||||| | |  |||| |||||| |    
T  4758 gagtgtaaacatgacgatgttgtgtgttttaactgcaatgaggaaggtcatattggttcgcaatgcaagaagcgtaagaaggcgcagactactgggagag 4857  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||||||||||||| | ||||||||||    
T  4858 tttttgctttgactggtactcagactgagaatgaggat 4895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 174
Target Start/End: Original strand, 14978 - 15146
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgag 105  Q
    |||||||||||  ||||| ||||| |||||| | ||||||||||| |||||||||||||| || ||||||||||||||| | ||||| | | ||||| ||    
T  14978 ccgttgtggcaagaaagggcatactattacataatgtaagcatgatgatgttgtgtgttttaactgcaatgaagagggttacattggtttggaatgcaag 15077  T
Q  106 aaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||||||| | |  ||||   | || || ||||||||  ||||||| ||||||| ||||||||||    
T  15078 aaacctaagaaggcgcaaactacaagaagagtttttgctttgactggtacgcagacagagaatgaggat 15146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 104501 - 104348
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||| ||| |||||||||||||||||| || ||||| |||| |||||||||| |||| ||||||||| | |  |||| ||||||      
T  104501 gagtgtaaacatgatgatattgcgtgtttcaattgcaatgaggaaggtcacattgagtcgcaatgcaagaagcctaagaaggcgcagactattgggagat 104402  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggta 190  Q
    | ||||||||  ||||||||||||| | ||| |||||| || ||||| ||||||    
T  104401 tttttgctttgactggtactcagactgggaacgaggatcgtttgattagaggta 104348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 11299 - 11149
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| || || |||||||  |||||||||||||| ||||||||  | ||||||||| |||||||||||||| |||  | || ||| || || |    
T  11299 tgtaagcatgatgacgtggtgtgttctaattgcaatgaagaaggtcatatcagttcgcaatgcaagaaacctaagaaggctcagaatactggtagagtgt 11200  T
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggta 190  Q
    |||||||  ||||||| || |||| |||||||||| || ||||| ||||||    
T  11199 ttgctttgactggtacgcaaacagagaatgaggatcgtttgattagaggta 11149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 15681 - 15547
Alignment:
Q  40 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtat 139  Q
    ||||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||| ||||  |||| ||||||||| |||  |||| ||| || || |    
T  15681 tgtaagcatgacgatgttgtatgttttaactgcaatgaagaaggtcatattggttcgtaatgtaagaagcctaagaaggctcagactactggaagagttt 15582  T
Q  140 ttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||  ||||||| || |||| ||||||||||    
T  15581 ttgctttgactggtacgcaaacagagaatgaggat 15547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 28350694 - 28350576
Alignment:
Q  94 tcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaat 193  Q
    ||||| ||| |||| ||||||||| |||   | ||||| ||||| ||||||||| ||||||||||||||||  |||  ||| ||||||| ||||||| ||    
T  28350694 tcgcagtgcaagaagcctaagaaggctcaggcaagtggaagggtgtttgctttatctggtactcagacagcagatggcgattgtctgatctgaggtacat 28350595  T
Q  194 tttcgaggacgaaaattct 212  Q
    |||||||||||||||||||    
T  28350594 tttcgaggacgaaaattct 28350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 19647698 - 19647593
Alignment:
Q  104 agaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggac 203  Q
    |||||||||||||  |||   ||||||||| ||| |||||||||||| ||||||||||| ||||||||||| |||||||  |||||| |||||  |||||    
T  19647698 agaaacctaagaaagctcagtctagtgggaaggtgtttgctttagctagtactcagacatcgaatgaggatcgtctgatcagaggtacattttttaggac 19647599  T
Q  204 gaaaat 209  Q
    ||||||    
T  19647598 gaaaat 19647593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 24817395 - 24817544
Alignment:
Q  25 catacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgta 124  Q
    ||||| |||||||| ||||||||| | |||||||||||||| || |||||||| || ||||||||||| || |||||| |||| ||||||||| | |  |    
T  24817395 catactattacagaatgtaagcattatgatgttgtgtgttttaactgcaatgaggaaggtcatattggttcacaatgcaagaagcctaagaaggcgcaga 24817494  T
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | | | |||| || ||||||||  ||||||| |||| || ||||||||||    
T  24817495 ccactaggagagtgtttgctttgactggtacacagatagagaatgaggat 24817544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 19817635 - 19817578
Alignment:
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgat 182  Q
    |||||||||  || |||||||||||||||||||||||| ||||||||||| |||||||    
T  19817635 ctagtgggaatgtgtttgctttagctggtactcagacatcgaatgaggatcgtctgat 19817578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 22463067 - 22463185
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||| || | || |||| | | | |||||  ||  | || |||||| | ||||||||    
T  22463067 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatgcaagcagccgaagagggcgcctactatgggtcgagtttttgctctggctggtac 22463166  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  22463167 tcagacagagaatgaggat 22463185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 24705068 - 24705186
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||| |||||||||||||| || || || || ||| || | ||||||||| | |  |||| | | ||||| ||||||||  |||||||    
T  24705068 ttgtgtgcttcaattgtaatgaagagggtcacataggttctcagtgcaagcagcctaagaaggcgccgactactagtagggtttttgctttgactggtac 24705167  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  24705168 tcagacagagaatgaggat 24705186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 23029047 - 23029108
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    ||||||| ||||||||||||||||||||||| ||||| || || ||| || |||||||||||    
T  23029047 ttgtgtgcttcaattgcaatgaagagggtcacattggttctcagtgcaagcaacctaagaag 23029108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 22742552 - 22742594
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgca 98  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||    
T  22742552 ttgtgtgcttcaattgcaatgaagagggtcacattggttcgca 22742594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 22733368 - 22733421
Alignment:
Q  64 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    |||||||| |||||||||||||| ||||| || || ||| ||||||||||||||    
T  22733368 ttcaattgtaatgaagagggtcacattggttcacagtgcaagaaacctaagaag 22733421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 30208575 - 30208624
Alignment:
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    ||||||||| |||  | |||||||||||||||||||||| ||||||||||    
T  30208575 ctagtgggaaggtgatcgctttagctggtactcagacagtgaatgaggat 30208624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 19817727 - 19817683
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatga 50  Q
    |||||||||||||||||||||||| ||| |||| || ||||||||    
T  19817727 ccgttgtggcagaaaaggacatacaattgcagattgcaagcatga 19817683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 1123 - 1038
Alignment:
Q  127 agtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattct 212  Q
    ||||| ||||| ||||||||||||||||||||||||||  |||  ||| ||| ||| |||||||||||||||| ||||||||||||    
T  1123 agtggaagggtgtttgctttagctggtactcagacagcagatggagatcgtcggatctgaggtaaattttcgaagacgaaaattct 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 11405 - 11539
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| || | ||||||| |||   |||||  ||  | || |||||| | ||||||||    
T  11405 ttgtgtgattcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaagaggacgtctactacgggtcgagtttttgctctggctggtac 11504  T
Q  156 tcagacagcgaatgaggatagtctgatttgaggta 190  Q
    |||||||| || ||||||| || ||||| ||||||    
T  11505 tcagacagagattgaggatcgtttgattagaggta 11539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 15090 - 15208
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| || | ||||||| |||   |||||  ||  | || |||||| | ||||||||    
T  15090 ttgtgtgattcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaagaggacgtctactacgggtcgagtttttgctctggctggtac 15189  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  15190 tcagacagagaatgaggat 15208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 17415 - 17297
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| |  ||||||||| | | | |||||  ||  | || |||||| | ||||||||    
T  17415 ttgtgtgcttcaattgcaatgaagagggtcatattggttcccaatgcaaacaacctaagagggcgcctactacgggtcgagtttttgctctggctggtac 17316  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  17315 tcagacagagaatgaggat 17297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 41205 - 41275
Alignment:
Q  104 agaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    |||||||||||||  |||   ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41205 agaaacctaagaaagctcagtctagtgggatggtgtttgctttagctggtactcagacagcgaatgaggat 41275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 17009 - 17085
Alignment:
Q  140 ttgctttagctggtactcagacagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||||| | |||||||||| || | |||||||| ||||||| | ||||||||||| |||||||||||||||||||    
T  17009 ttgctttaaccggtactcagatagtggatgaggatcgtctgatctaaggtaaatttttgaggacgaaaattctataa 17085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 128649 - 128537
Alignment:
Q  70 tgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatg 169  Q
    ||||||||||| || || ||||| ||||| ||| || | ||||||||| ||||  | ||||| || || ||||||||| ||||||||||||||||| |||    
T  128649 tgcaatgaagaaggacacattggttcgcagtgcaaggagcctaagaaggctcgggcaagtggaagagtgtttgctttatctggtactcagacagcggatg 128550  T
Q  170 aggatagtctgat 182  Q
    ||||| |||||||    
T  128549 aggatcgtctgat 128537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 18354 - 18441
Alignment:
Q  5 cccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgg 92  Q
    |||||||||| |||||||||||| | ||| |||| || |||||||| ||||| ||||||||||| || |||||||| ||||| |||||    
T  18354 cccgttgtggtagaaaaggacatgcaattgcagattgcaagcatgatgatgtggtgtgtttcaactgtaatgaagaaggtcacattgg 18441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 14081 - 14199
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| || | ||||||| | | | |||||  ||    || |||||| | ||||||||    
T  14081 ttgtgtgcttcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaagagggcgcctactacaggtcaagtttttgctatggctggtac 14180  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||||| ||||||||||    
T  14181 tcagacagagaatgaggat 14199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0297 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 7706 - 7832
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||| ||||| || |  ||| || | ||||||||| | |  |||| ||| ||||| || |||||  |||||||    
T  7706 ttgtgtgcttcaattgcaatgaagagggtcacattggttctcggtgcaagcagcctaagaaggcgccgactactggtagggttttcgctttgactggtac 7805  T
Q  156 tcagacagcgaatgaggatagtctgat 182  Q
    |||||| | |||||||||||| |||||    
T  7806 tcagaccgagaatgaggatagcctgat 7832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 41906 - 41769
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||| ||||||| || ||||||||||| || ||||| ||||| ||||| ||| |||| ||||||||| | |  |||| ||| || |    
T  41906 gagtgtaaacatgatgatattgtgtgctttaattgcaatgaggaaggtcacattggttcgcagtgcaagaagcctaagaaggcgcagactactggtagag 41807  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||| ||||||||| | ||||||||||    
T  41806 tttttgctttgactgctactcagactgagaatgaggat 41769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 75626 - 75489
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    |||||||| ||||| ||| ||||||| || ||||||||||| || ||||| ||||| ||||| ||| |||| ||||||||| | |  |||| ||| || |    
T  75626 gagtgtaaacatgatgatattgtgtgctttaattgcaatgaggaaggtcacattggttcgcagtgcaagaagcctaagaaggcgcagactactggtagag 75527  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||  ||| ||||||||| | ||||||||||    
T  75526 tttttgctttgactgctactcagactgagaatgaggat 75489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 16611 - 16775
Alignment:
Q  9 ttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaa 108  Q
    |||||| || ||||| ||||| |||| |||||| ||| |||| ||| |  |||||||||| |  |||||||| ||||| ||||| ||||| ||| ||||     
T  16611 ttgtggtaggaaagggcatactattatagagtgcaagaatgatgatatgatgtgtttcaactataatgaagaaggtcacattggttcgcagtgcaagaag 16710  T
Q  109 cctaagaagactcgtactagtgggagggtatttgctttagctggtactcagacagcgaatgagga 173  Q
    |||||||||||||   | |||||||  || ||||||||  ||||||| || |||| |||||||||    
T  16711 cctaagaagactcaggccagtgggaaagtgtttgctttgactggtacgcaaacagtgaatgagga 16775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 15734 - 15678
Alignment:
Q  160 acagcgaatgaggatagtctgatttgaggtaaattttcgaggacgaaaattctataa 216  Q
    |||||| ||| |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  15734 acagcggatggggatcgtctgatctgaggtaaattttcaaggacgaaaattctataa 15678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 5253 - 5207
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 102  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||||    
T  5253 ttgtgtggttcaattgcaatgaagagggtcatattggttcccaatgc 5207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 32134 - 32016
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||||||| || |||| ||||||||||| ||||| || || ||| || | ||||||||| | |  |||| ||| ||||| ||||||||  |||||||    
T  32134 ttgtgtgtttcgatcgcaacgaagagggtcacattggttctcagtgcaagcagcctaagaaggcgccgactactggtagggtttttgctttgactggtac 32035  T
Q  156 tcagacagcgaatgaggat 174  Q
     ||||||| ||||||||||    
T  32034 acagacagagaatgaggat 32016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 37600 - 37482
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||||||| || |||| ||||||||||| ||||| || || ||| || | ||||||||| | |  |||| ||| ||||| ||||||||  |||||||    
T  37600 ttgtgtgtttcgatcgcaacgaagagggtcacattggttctcagtgcaagcagcctaagaaggcgccgactactggtagggtttttgctttgactggtac 37501  T
Q  156 tcagacagcgaatgaggat 174  Q
     ||||||| ||||||||||    
T  37500 acagacagagaatgaggat 37482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 54911 - 54831
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    ||||| || ||||| ||| |||||||||| |||||||||||||||||||| ||||| ||| | ||  |||| |||||||||    
T  54911 gagtgcaaacatgatgatattgtgtgttttaattgcaatgaagagggtcacattggttcgtagtgtaagaagcctaagaag 54831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 2184 - 2131
Alignment:
Q  126 tagtgggagggtatttgctttagctggtactcagacagcgaatgaggatagtct 179  Q
    |||||||| ||| ||| |||||||||||| ||||||||||||||||||| ||||    
T  2184 tagtgggaaggtgttttctttagctggtaatcagacagcgaatgaggatcgtct 2131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 24492 - 24443
Alignment:
Q  125 ctagtgggagggtatttgctttagctggtactcagacagcgaatgaggat 174  Q
    ||||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  24492 ctagtgggaaggtgtttgctttagcaggtactcagaaagcgaatgaggat 24443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 17117 - 17233
Alignment:
Q  58 gtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactc 157  Q
    ||||||||||| ||||| |||||||||||||||||||| || ||  || | ||||||| | | |  ||||  || || || ||| || ||||||||||||    
T  17117 gtgtgtttcaactgcaaagaagagggtcatattgggtcccagtgtaagcagcctaagagggcgccgactacgggtagagttttttctctagctggtactc 17216  T
Q  158 agacagcgaatgaggat 174  Q
    |||||| ||||||||||    
T  17217 agacagagaatgaggat 17233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 24611 - 24567
Alignment:
Q  6 ccgttgtggcagaaaaggacatacgattacagagtgtaagcatga 50  Q
    |||||||||||||||||||||||| ||| |||| || ||||||||    
T  24611 ccgttgtggcagaaaaggacatacaattgcagattgcaagcatga 24567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 14358 - 14278
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    |||||||||||||  ||| | || ||||| |||||||||||||||||||| ||||| || || ||| |||| |||||||||    
T  14358 gagtgtaagcatgttgatatagtatgttttaattgcaatgaagagggtcacattggttcacagtgcaagaagcctaagaag 14278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 105 - 1
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| || | ||||||| | | | |||||  ||  | || |||||||| ||||||||    
T  105 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgcaagcagcctaagagggcgcctactacgggtcgagtttttgctttggctggtac 6  T
Q  156 tcaga 160  Q
    |||||    
T  5 tcaga 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 15628 - 15746
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||||||||| ||||||||||| || || || ||| || | ||||||| | | |  |||| ||| || || |||||||| ||||||||    
T  15628 ttgtgtgcttcaattgcaatgatgagggtcatatcggttctcagtgcaagcagcctaagagggcgccaactactggtagagtttttgctttggctggtac 15727  T
Q  156 tcagacagcgaatgaggat 174  Q
     ||||| | ||||||||||    
T  15728 acagaccgagaatgaggat 15746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 295 - 177
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| |||||||| |||||||||||||| ||||| || || ||| || | ||||||||| | |  |||| ||| || || || |||||  |||||||    
T  295 ttgtgtgcttcaattgtaatgaagagggtcacattggttctcagtgcaagcagcctaagaaggcgccgactactggtagagttttcgctttgactggtac 196  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||| | ||||||||||    
T  195 tcagaccgagaatgaggat 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 24005 - 24099
Alignment:
Q  67 aattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtactcagac 161  Q
    ||||||||||| || ||||| ||||| ||||||||| |||| ||||||||| | |  |||| |||||| || || || ||| |||||||||||||    
T  24005 aattgcaatgaggaaggtcacattggttcgcaatgcaagaagcctaagaaggcgcagactactgggagagttttagcattaactggtactcagac 24099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 21859 - 21741
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||| ||||| ||  | ||| || | ||||||||| | |  |||| ||| ||  | ||||||||  |||||||    
T  21859 ttgtgtgcttcaattgcaatgaagagggtcacattggttcttagtgcaagcagcctaagaaggcgccgactactggtagactttttgctttgactggtac 21760  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||| | ||||||||||    
T  21759 tcagaccgagaatgaggat 21741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 37283 - 37165
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||||||||||||||| ||||| ||  | ||| || | ||||||||| | |  |||| ||| ||  | ||||||||  |||||||    
T  37283 ttgtgtgcttcaattgcaatgaagagggtcacattggttcttagtgcaagcagcctaagaaggcgccgactactggtagactttttgctttgactggtac 37184  T
Q  156 tcagacagcgaatgaggat 174  Q
    |||||| | ||||||||||    
T  37183 tcagaccgagaatgaggat 37165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 69470 - 69588
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggagggtatttgctttagctggtac 155  Q
    ||||||| ||||||||||| ||||||||||| ||||| || || ||| || | |||||||||   |  |||| ||| ||||| || ||||| ||||||||    
T  69470 ttgtgtgcttcaattgcaaagaagagggtcacattggttctcagtgcaagtagcctaagaaggtgccgactactggtagggttttggctttggctggtac 69569  T
Q  156 tcagacagcgaatgaggat 174  Q
     ||||||  ||||||||||    
T  69570 acagacaaagaatgaggat 69588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 229901 - 229947
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 102  Q
    ||||||| ||||||||||| ||||||||||||||||| || ||||||    
T  229901 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatgc 229947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 17379 - 17516
Alignment:
Q  37 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcgtactagtgggaggg 136  Q
    ||||| || ||||| ||| |||| || || || ||||||||||||||||| ||||| || || ||| |||| |||||| || | |  |||| ||| || |    
T  17379 gagtgcaaacatgatgatattgtatgctttaactgcaatgaagagggtcacattggttcacagtgcaagaagcctaagcaggcgccgactactggtagag 17478  T
Q  137 tatttgctttagctggtactcagacagcgaatgaggat 174  Q
    | ||||||||| ||||||| |||||||  |||||||||    
T  17479 tgtttgctttaactggtacacagacagaaaatgaggat 17516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 50394 - 50439
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatg 101  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||    
T  50394 ttgtgtgcttcaattgtaatgaagagggtcatattggttcacaatg 50439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 15604 - 15636
Alignment:
Q  184 tgaggtaaattttcgaggacgaaaattctataa 216  Q
    ||||||| |||||||||||||||||||||||||    
T  15604 tgaggtacattttcgaggacgaaaattctataa 15636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 43 - 7
Alignment:
Q  56 ttgtgtgtttcaattgcaatgaagagggtcatattgg 92  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  43 ttgtgtgcttcaattgcaatgaggagggtcatattgg 7  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 40561 - 40617
Alignment:
Q  61 tgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 117  Q
    ||||| |||||||||||||||||||| ||||| || || ||| |||| |||||||||    
T  40561 tgttttaattgcaatgaagagggtcacattggttcacagtgcaagaagcctaagaag 40617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 165234 - 165266
Alignment:
Q  184 tgaggtaaattttcgaggacgaaaattctataa 216  Q
    ||||||| |||||||||||||||||||||||||    
T  165234 tgaggtacattttcgaggacgaaaattctataa 165266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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