View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16588_low_47 (Length: 208)
Name: NF16588_low_47
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_47 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 27571126 - 27570936
Alignment:
| Q |
18 |
actatagacatatctcatgttgcttcagattgacaatgcacaatatacatcagccaactattatctgatatatctgcaatttgtaaatcatgagtaggac |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27571126 |
actacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagccaactattatctgatatatcttcaatttgtaaatcatgagtaggac |
27571027 |
T |
|
| Q |
118 |
ctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27571026 |
ctgaattatagatcagaagcagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat |
27570936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 27414960 - 27415055
Alignment:
| Q |
85 |
atatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatca |
181 |
Q |
| |
|
|||||| ||||| ||||||| | |||||||||||||| |||||| ||||||||||||| |||||| || |||||||||||| || ||| |||||||| |
|
|
| T |
27414960 |
atatatgtgcaacttgtaaagcttgagtaggacctgatttatagctcagaaacagtgtgaggagg-aaaaagagaaccaattttgaacacaagatca |
27415055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 27425216 - 27425326
Alignment:
| Q |
98 |
ttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaacc |
197 |
Q |
| |
|
||||||| | || ||||||||||| |||||| |||||| ||||||||||||| || | |||||| |||||| ||| ||||||||||||| || | ||||| |
|
|
| T |
27425216 |
ttgtaaagcttgcgtaggacctgatttatagttcagaagcagtgttaggaggaaaaacgagaacaaatattgaacacaagatcacaaaccaccaggaacc |
27425315 |
T |
|
| Q |
198 |
acgttttatat |
208 |
Q |
| |
|
|| ||||||| |
|
|
| T |
27425316 |
acaatttatat |
27425326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 27566634 - 27566577
Alignment:
| Q |
151 |
aagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat |
208 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
27566634 |
aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatat |
27566577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University