View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_6 (Length: 490)
Name: NF16588_low_6
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 52810764 - 52810301
Alignment:
| Q |
17 |
gacacagggaagtggacaatgggtttctttatatcattgatctctgctatcatagcccttttgacatttttatcaggatctcctaaatatagatacttga |
116 |
Q |
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| T |
52810764 |
gacacggggaagtggacaatgggtttctttatatcattgatctctgctatcatagcccttttgacatttttatcaggatctcctaaatatagatacttga |
52810665 |
T |
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| Q |
117 |
agccatcaggaaaccctgtcgtaagggttgctcaggtttttacagctgctgctaggaaatgggatgttgctccagccaaggcagacaaactttttgaggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52810664 |
agccatcaggaaaccctgtcgtaagggttgctcaggtttttacagctgctgctaggaaatgggatgttgctccagccaaggcagacaaactttttgaggt |
52810565 |
T |
|
| Q |
217 |
tctgggttctagatctgccatcaaaggttgtagaaagattctccacagtgatgattttcggtaagctagctctgagataaaacaaaacattattaacttg |
316 |
Q |
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| T |
52810564 |
tctgggttctagatctgccatcaaaggttgtagaaagattctgcacagtgatgattttcggtaagctagctctgagataaaacaaaacattattaacttg |
52810465 |
T |
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| Q |
317 |
aagttgaaccaaacaaagtgatatagcaagcaagctatattaatttctaaaaaagatggaagaaagaaccccaaacattagatgaatttaat---taata |
413 |
Q |
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| T |
52810464 |
aagttgaaccaaacaaagtgatatagcaagcaagctatattaatttctaaaaaagatggaagaaagaa-cccaaacattagatgaatttaattaataata |
52810366 |
T |
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| Q |
414 |
atattttgaccttcaactcattggtaagagttttaccctttaacccatctcaagaaacggagtat |
478 |
Q |
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| T |
52810365 |
atattttgaccttcaactcattggtaagagttttaccctttaacccatctcaagaaacggagtat |
52810301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 474
Target Start/End: Complemental strand, 52810268 - 52810228
Alignment:
| Q |
434 |
ttggtaagagttttaccctttaacccatctcaagaaacgga |
474 |
Q |
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|||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
52810268 |
ttggtaagggttttaccctttaacctatctcaagagacgga |
52810228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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