View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_7 (Length: 484)
Name: NF16588_low_7
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 48 - 428
Target Start/End: Complemental strand, 21597148 - 21596754
Alignment:
| Q |
48 |
ctattaataatagttaagattattgtttcagaaaaatagttaagattattatgataaggattacagaatctgaaattaatagttaagnnnnnnnnccc-t |
146 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
21597148 |
ctattaataata---aagattattgtttcagaaaaatagttaagattattatgataaggattacagaatctgaaattaatagttaagatttttttttcat |
21597052 |
T |
|
| Q |
147 |
atctttaataataacatgcaactatagccaagaaaataaccatgaagcagcatgcaatccttcttggatccaatgttccatgtcaacgtaaacaaacttt |
246 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21597051 |
atctttaataataacatgcaagtatagccaagaaaataaccatgaagcagcatgcaatccttcttggatccaatgttccatgtcaacgtaaacaaacttt |
21596952 |
T |
|
| Q |
247 |
ggtctctcagcatatcaaagtattttatat----------------gcttaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaa |
330 |
Q |
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| | ||| || ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21596951 |
gatttctgaggatatcaaagtagtttatatattgcattggatatatgattaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaa |
21596852 |
T |
|
| Q |
331 |
aaagagcaactctgcttccttgttttgtaaatatttatagcttagttcaagacaacacaaagcatttctcattccttcatcgtgatcatcaaatgccg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
21596851 |
aaagagcaactctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgccg |
21596754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 279 - 428
Target Start/End: Complemental strand, 21622886 - 21622737
Alignment:
| Q |
279 |
ttaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttc |
378 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21622886 |
ttaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttc |
21622787 |
T |
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| Q |
379 |
aagacaacacaaagcatttctcattccttcatcgtgatcatcaaatgccg |
428 |
Q |
| |
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|||||||| |||||||||||||| |||||| ||||||||||||||||||| |
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| T |
21622786 |
aagacaactcaaagcatttctcactccttcgtcgtgatcatcaaatgccg |
21622737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 279 - 428
Target Start/End: Complemental strand, 21644600 - 21644451
Alignment:
| Q |
279 |
ttaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttc |
378 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644600 |
ttaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttc |
21644501 |
T |
|
| Q |
379 |
aagacaacacaaagcatttctcattccttcatcgtgatcatcaaatgccg |
428 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
21644500 |
aagacaactcaaagcatttctcactccttcgtcgtgatcatcaaatgccg |
21644451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 279 - 426
Target Start/End: Original strand, 21715129 - 21715276
Alignment:
| Q |
279 |
ttaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttc |
378 |
Q |
| |
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||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21715129 |
ttaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttc |
21715228 |
T |
|
| Q |
379 |
aagacaacacaaagcatttctcattccttcatcgtgatcatcaaatgc |
426 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
21715229 |
aagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgc |
21715276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 272 - 420
Target Start/End: Complemental strand, 21704394 - 21704246
Alignment:
| Q |
272 |
tatatgcttaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagc |
371 |
Q |
| |
|
|||||| ||||||| || | ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21704394 |
tatatgattaaatcttctattgatatgttgtaatcttctggaaacatagaacacatcaaaaagagcaactctgcttccttgttttgtaaatatgtatagc |
21704295 |
T |
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| Q |
372 |
ttagttcaagacaacacaaagcatttctcattccttcatcgtgatcatc |
420 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
21704294 |
ttagttcaagacaacttaaagcatctctcactccttcatcgtgatcatc |
21704246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 21623482 - 21623430
Alignment:
| Q |
82 |
aatagttaagattattatgataaggattacagaatctgaaattaatagttaag |
134 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
21623482 |
aatagttaagattattttgataaggattacaaaatctgaaattaatagttaag |
21623430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 21645196 - 21645144
Alignment:
| Q |
82 |
aatagttaagattattatgataaggattacagaatctgaaattaatagttaag |
134 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
21645196 |
aatagttaagattattttgataaggattacaaaatctgaaattaatagttaag |
21645144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 21645228 - 21645181
Alignment:
| Q |
24 |
gtgatagataccgaagtagatttactattaataatagttaagattatt |
71 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21645228 |
gtgatagatactgaagtagatttactattaataatagttaagattatt |
21645181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 21623514 - 21623467
Alignment:
| Q |
24 |
gtgatagataccgaagtagatttactattaataatagttaagattatt |
71 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
21623514 |
gtgatagatacggaagtagatttactatgaataatagttaagattatt |
21623467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 21623101 - 21623067
Alignment:
| Q |
226 |
atgtcaacgtaaacaaactttggtctctcagcata |
260 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
21623101 |
atgtcaacgtaaacaaactttggtctctcagcata |
21623067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 21644815 - 21644781
Alignment:
| Q |
226 |
atgtcaacgtaaacaaactttggtctctcagcata |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
21644815 |
atgtcaacgtaaacaaactttggtctctcagcata |
21644781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 21597357 - 21597322
Alignment:
| Q |
24 |
gtgatagataccgaagtagatttactattaataata |
59 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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|
| T |
21597357 |
gtgatagataccgaagtagatttactattattaata |
21597322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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