View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16588_low_9 (Length: 474)
Name: NF16588_low_9
Description: NF16588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16588_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 22 - 459
Target Start/End: Complemental strand, 5810348 - 5809914
Alignment:
| Q |
22 |
taggtgcttttaatttgttggaaaatgaaagacttactggacaacataaaactacttccatgtttgatttgaagaataatggttgtctaacaaaatgaaa |
121 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
5810348 |
taggtgcttttaattttttggaaaatgaaagacttactggacaacataaaactacttccatgtttgatttgaagatt---ggttgtctaacaaaatgaaa |
5810252 |
T |
|
| Q |
122 |
catccaattttcttacttacaccctttgccaactttatactttgttttggaattttacttattttccctctagttgtttatatctcctcttgcttttcaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
5810251 |
catccaattttcttacttacaccctttgccaactttgtactttgttttggaattttacttattttccctctcgttgtttatatctcctcttgctttttaa |
5810152 |
T |
|
| Q |
222 |
atatttttcccatcctataaaaaatattcagggctattaagtctcgcttccatacataaataagtataatttcttatattggggggtatgtcttgtgaga |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5810151 |
atatttttcccatcctataaaaaatattcagggctattaagtctcgcttccatacataaataagtataatttcttatattg-ggggtatgtcttgtgaga |
5810053 |
T |
|
| Q |
322 |
aattgttaggaacccagaaatcatgttgaatagaa-ttttattttatttttgttgagaaaacacaaaaaatgatatgtttccatattccaattcattaat |
420 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
5810052 |
aattgttaggaacccagaaatcatgttgaatagaattttttttttttttttgttgagaaaacacaaaaaatgatatgtttccattttccaatgcattaat |
5809953 |
T |
|
| Q |
421 |
aatttcatgttttcttggcattataatatttcatctcat |
459 |
Q |
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| T |
5809952 |
aatttcatgttttcttggcattataatatttcatctcat |
5809914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 37739650 - 37739544
Alignment:
| Q |
202 |
tatctcctcttgcttttcaaatatttttcccatcctataaaaaatattcagggctattaagtctcgcttccatac----ataaataagtataatttctta |
297 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||| ||||| || ||||| | |||||||||| ||||| ||||||||||| ||| |
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| T |
37739650 |
tatctcctcttgcttttcaaatatttttcctttgctataaaaaatatccagggttagtaagttttgcttccatacatatataaaaaagtataatttttta |
37739551 |
T |
|
| Q |
298 |
tattggg |
304 |
Q |
| |
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||||||| |
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| T |
37739550 |
tattggg |
37739544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 38605179 - 38605265
Alignment:
| Q |
140 |
acaccctttgccaact-ttatactttgttttggaattttacttattttccctctagttgtttatatctcctcttgcttttcaaatattt |
227 |
Q |
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|||||||||||||||| || ||||||||||||||| ||||||||||| | |||| |||||||| ||||||||||||||||||||||| |
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| T |
38605179 |
acaccctttgccaactgttgtactttgttttggaagattacttatttttcgtctatttgtttat--ctcctcttgcttttcaaatattt |
38605265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 37755546 - 37755438
Alignment:
| Q |
202 |
tatctcctcttgcttttcaaatatttttcccatcctat-aaaaaatattcagggctattaagtctcgcttc----catacataaataagtataatttctt |
296 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||| ||||||||| ||||| || ||||| | ||||| |||||||||| ||||||||||| || |
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| T |
37755546 |
tatctcgtcttgcttttcaaatatttttcctttgctataaaaaaatatccagggttagtaagttttgcttccatacatacataaaaaagtataatttttt |
37755447 |
T |
|
| Q |
297 |
atattgggg |
305 |
Q |
| |
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||||||||| |
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| T |
37755446 |
atattgggg |
37755438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 37761520 - 37761412
Alignment:
| Q |
202 |
tatctcctcttgcttttcaaatatttttcccatcctat-aaaaaatattcagggctattaagtctcgcttc----catacataaataagtataatttctt |
296 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||| ||||||||| ||||| || ||||| | ||||| |||||||||| ||||||||||| || |
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| T |
37761520 |
tatctcgtcttgcttttcaaatatttttcctttgctataaaaaaatatccagggttagtaagttttgcttccatacatacataaaaaagtataatttttt |
37761421 |
T |
|
| Q |
297 |
atattgggg |
305 |
Q |
| |
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||||||||| |
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| T |
37761420 |
atattgggg |
37761412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 37755376 - 37755319
Alignment:
| Q |
395 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatttc |
452 |
Q |
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|||||||||| ||||||| || | |||||||||| ||| ||||||||||||||||||| |
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| T |
37755376 |
atgtttccattttccaatgcagtcataatttcatttttccttggcattataatatttc |
37755319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 37761350 - 37761293
Alignment:
| Q |
395 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatttc |
452 |
Q |
| |
|
|||||||||| ||||||| || | |||||||||| ||| ||||||||||||||||||| |
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| T |
37761350 |
atgtttccattttccaatgcagtcataatttcatttttccttggcattataatatttc |
37761293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 450
Target Start/End: Original strand, 38605424 - 38605479
Alignment:
| Q |
395 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatt |
450 |
Q |
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|||||||||| ||||||| || |||||||||||||| ||||||||||||||||| |
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| T |
38605424 |
atgtttccattttccaatgcaaacataatttcatgtttccttggcattataatatt |
38605479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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