View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16589_low_1 (Length: 1058)
Name: NF16589_low_1
Description: NF16589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16589_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 16 - 693
Target Start/End: Complemental strand, 27684038 - 27683349
Alignment:
| Q |
16 |
aagacaacaacattggtctatgagttgggttcaaagacaccatatggtttataactattgccaagatcctaaaagggaccatagactaacacctgaatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27684038 |
aagacaacaacattggtctatgagttgggttcaaagacaccacatggtttataactattgccaagatcctaaaagggaccatagactaacacctgaatgt |
27683939 |
T |
|
| Q |
116 |
tggggttaaatctttttattgtaaagtgaataaatttggggatgatttggtctccaaataatttgctagtattatttgttgtgttgttannnnnnnnnnn |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27683938 |
tggggttaaatctttttattgtaaagtgaataaatttggggatgatttggtctccaaataatttgctagtattatttgttgtgttgttatttttttaatt |
27683839 |
T |
|
| Q |
216 |
nnncatggggtttgttgcaaaaaagcaacattgacacaacaaattaagttaggaaaattgtgtgtatgatttttggtttatgtaatgtttctcttttggc |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27683838 |
tttcatggggtttgttgcgaaaaagcaacattgacacaacaaattaagttaggaaaattgtgtgcatgatttttggtttatgtaatgtttctcttttggc |
27683739 |
T |
|
| Q |
316 |
ataatgtccaatgaaaagcaa----------ccaatcaaaataagagtattggaattggtttgagacattaaggtaaatggtgttctaagaacactcttc |
405 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27683738 |
ataatgtccaatgaaaagcaaaatgaaatggccaatcaaaataagtgtattggaattggtttgagacattaaggtaaatggtgttctaagaacactcttc |
27683639 |
T |
|
| Q |
406 |
at---tttataaagtttatttttagagtcaatttataatgttaccatgttactattgtcatgttcatgatgcatgttgcagtggtcatgtcagcaagcac |
502 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
27683638 |
atcattttataaagtttatttttagagtcaatttataatgttaccatgttactattgttatgttcatgatgaatgttgcagtggtcatgtcagcaagcac |
27683539 |
T |
|
| Q |
503 |
atgatgggaaagctcttggtaatgctagaaaaaatgacagtgccagagtaccccaaattaatgctactcaaaatgcaatagaatcaatcatgctgctcaa |
602 |
Q |
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| T |
27683538 |
atgatgggaaagctcttggtagtgctagaaaaaatgacagtgccagagtaccccaaattaatgctactcaaaatgcaatagaatcaatcatgctgctcaa |
27683439 |
T |
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| Q |
603 |
atttattgtgaagttatacaaattcacttgtagttttttgtgtcgttgtaaatataacaaacatatatacatacccgacaaaaatgtgagt |
693 |
Q |
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| T |
27683438 |
atttattgtgaagttatacaaattcacttgtagtttttt-tgtcgttgtaaatataacaaacatatatacatacccaacaaaaatgtgagt |
27683349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 759 - 1043
Target Start/End: Complemental strand, 27683284 - 27682989
Alignment:
| Q |
759 |
aattcatcataaattatggggaaaatgcaaggatttatatttgacatgcattatggtagttggatttgtatcaagatcggatagtttatattt------- |
851 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
27683284 |
aattcatcataaattatgaggaaaatgcaagaatttatatttgacatgcattttggtagttgaatttgtatcaagatcggatagtttatattttaaatat |
27683185 |
T |
|
| Q |
852 |
--taaagtaggaacttcaaatatttatatttgggtgaggtttagcatggaaaatgag-nnnnnnnnncatgatggaaaagtttaagcaaatcatagatat |
948 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||| |
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| T |
27683184 |
tttaaagtaggaacttcaaatatttatatttgggtgaggtttagcatgaaaaatgagagttgttttttatgatggaaaagtttaagcagaccatagatat |
27683085 |
T |
|
| Q |
949 |
aatannnnnnnattcggacgtccagatttgttacatgttaaagaccaagaacgttttgat-gggatctatgaaataaaaaaggtgactcgatgatg |
1043 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| | |||||| |
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| T |
27683084 |
aatacttttttatgcggacgtccagatttgttacatgttaaagaccaagaacgttttgatggggatttatgaaacaaaaaaggtgaccccatgatg |
27682989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 41270477 - 41270584
Alignment:
| Q |
19 |
acaacaacattggtctatgagttgggttcaaagacaccatatggtttataactattgccaagatcctaaaagggaccatagactaacacctgaatgttgg |
118 |
Q |
| |
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||||||| || || ||||||||||||| |||||| |||||||||||||||| ||||| |||| || ||||| || |||||||||||||||||||||| | |
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| T |
41270477 |
acaacaaaatagggctatgagttgggtgcaaagataccatatggtttataattattgtaaagaccccaaaagagatcatagactaacacctgaatgttcg |
41270576 |
T |
|
| Q |
119 |
ggttaaat |
126 |
Q |
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|||||||| |
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| T |
41270577 |
ggttaaat |
41270584 |
T |
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