View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16589_low_4 (Length: 298)
Name: NF16589_low_4
Description: NF16589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16589_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 79 - 286
Target Start/End: Complemental strand, 47010041 - 47009834
Alignment:
| Q |
79 |
ataccacctcctactctcacatttaccacccttgtagctgtttttggttcttacgtttttggaactgctgtaagttttttcaccattttctttctatctt |
178 |
Q |
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| T |
47010041 |
ataccacctcctactctcacatttaccacccttgtagctgtttttggttcttacgtttttggaactgctgtaagttttttcaccattttctttctatctt |
47009942 |
T |
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| Q |
179 |
tataacaattctcaacattcaacaacatcgctcattttacagatcggatattcatcccctactcaagctagaatcatgattgacctcaatcttactgtcg |
278 |
Q |
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| T |
47009941 |
tataacaattctcaacattcaacaacatcgctcattttacagatcggatattcatcccctactcaagctagaatcatgattgacctcaatcttactgtcg |
47009842 |
T |
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| Q |
279 |
cacaggtt |
286 |
Q |
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|||||||| |
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| T |
47009841 |
cacaggtt |
47009834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 47010104 - 47010065
Alignment:
| Q |
19 |
gatgttgcttccaacgacgaacaacacaaacaaaagatta |
58 |
Q |
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| T |
47010104 |
gatgttgcttccaacgacgaacaacacaaacaaaagatta |
47010065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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