View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16589_low_5 (Length: 250)

Name: NF16589_low_5
Description: NF16589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16589_low_5
NF16589_low_5
[»] chr7 (17 HSPs)
chr7 (17-237)||(35296703-35296923)
chr7 (22-219)||(41329373-41329570)
chr7 (41-232)||(32653498-32653689)
chr7 (20-227)||(666740-666948)
chr7 (23-110)||(39981334-39981421)
chr7 (122-234)||(17288129-17288245)
chr7 (122-234)||(41515109-41515223)
chr7 (22-180)||(43442705-43442863)
chr7 (22-96)||(41328235-41328309)
chr7 (122-186)||(28326329-28326393)
chr7 (132-234)||(3330818-3330918)
chr7 (99-224)||(26146604-26146730)
chr7 (92-166)||(44376644-44376718)
chr7 (92-166)||(44385511-44385585)
chr7 (112-234)||(45721655-45721779)
chr7 (32-183)||(10955871-10956022)
chr7 (123-230)||(29589162-29589269)
[»] chr3 (13 HSPs)
chr3 (17-237)||(14744074-14744294)
chr3 (22-216)||(49380860-49381054)
chr3 (22-216)||(13621864-13622058)
chr3 (22-110)||(13620936-13621024)
chr3 (118-234)||(47766840-47766958)
chr3 (22-102)||(49379717-49379797)
chr3 (115-183)||(48253039-48253107)
chr3 (92-234)||(10301705-10301848)
chr3 (115-179)||(53809439-53809503)
chr3 (122-234)||(10339878-10339992)
chr3 (128-236)||(5122432-5122541)
chr3 (122-183)||(7271533-7271594)
chr3 (46-110)||(37415035-37415099)
[»] chr2 (10 HSPs)
chr2 (22-234)||(4919843-4920057)
chr2 (27-216)||(28610043-28610232)
chr2 (45-234)||(45699568-45699759)
chr2 (22-183)||(19397546-19397707)
chr2 (22-110)||(28611264-28611352)
chr2 (99-225)||(1147842-1147969)
chr2 (22-99)||(4921081-4921158)
chr2 (41-86)||(45699535-45699580)
chr2 (27-108)||(19398814-19398895)
chr2 (23-116)||(8321249-8321342)
[»] chr1 (16 HSPs)
chr1 (22-234)||(51446729-51446943)
chr1 (27-216)||(28051514-28051702)
chr1 (22-216)||(14479421-14479615)
chr1 (22-234)||(40533489-40533704)
chr1 (41-110)||(28050356-28050425)
chr1 (17-106)||(40634707-40634796)
chr1 (22-110)||(14478282-14478370)
chr1 (20-179)||(12667218-12667377)
chr1 (22-110)||(51445606-51445694)
chr1 (100-173)||(14429845-14429918)
chr1 (130-234)||(26803106-26803211)
chr1 (32-234)||(48528782-48528987)
chr1 (123-234)||(40110542-40110654)
chr1 (122-173)||(50679773-50679824)
chr1 (22-83)||(48527550-48527611)
chr1 (123-183)||(24516448-24516508)
[»] chr4 (22 HSPs)
chr4 (22-234)||(52137442-52137656)
chr4 (22-216)||(26495138-26495332)
chr4 (40-216)||(36244673-36244849)
chr4 (22-216)||(8363295-8363489)
chr4 (22-216)||(56156951-56157145)
chr4 (92-234)||(44499872-44500014)
chr4 (122-234)||(46795915-46796029)
chr4 (118-234)||(47667287-47667405)
chr4 (22-110)||(36243535-36243623)
chr4 (27-186)||(36846496-36846654)
chr4 (22-110)||(56157508-56157596)
chr4 (115-183)||(29665516-29665584)
chr4 (41-110)||(26496321-26496390)
chr4 (46-234)||(26631104-26631295)
chr4 (115-234)||(38554035-38554156)
chr4 (22-110)||(20620155-20620243)
chr4 (128-234)||(41348358-41348465)
chr4 (115-183)||(307747-307815)
chr4 (22-110)||(20625516-20625604)
chr4 (23-110)||(52138807-52138893)
chr4 (99-218)||(669548-669667)
chr4 (22-83)||(1521233-1521294)
[»] scaffold0219 (2 HSPs)
scaffold0219 (22-234)||(6911-7123)
scaffold0219 (41-116)||(8196-8271)
[»] scaffold0114 (1 HSPs)
scaffold0114 (22-216)||(38556-38750)
[»] chr8 (15 HSPs)
chr8 (41-195)||(9853602-9853756)
chr8 (27-234)||(42793720-42793929)
chr8 (92-234)||(24191463-24191606)
chr8 (129-234)||(38104-38212)
chr8 (22-110)||(9854891-9854979)
chr8 (98-237)||(45395902-45396042)
chr8 (92-234)||(43203166-43203310)
chr8 (32-234)||(31844394-31844598)
chr8 (128-179)||(36757166-36757217)
chr8 (112-234)||(39516385-39516510)
chr8 (123-234)||(22621024-22621136)
chr8 (42-110)||(38697904-38697972)
chr8 (122-183)||(7770110-7770171)
chr8 (122-183)||(7777787-7777848)
chr8 (115-183)||(36939975-36940043)
[»] chr5 (13 HSPs)
chr5 (22-216)||(11796585-11796778)
chr5 (41-234)||(10736824-10737019)
chr5 (92-183)||(9219262-9219353)
chr5 (123-185)||(5975870-5975932)
chr5 (122-227)||(8188098-8188203)
chr5 (36-110)||(13520794-13520868)
chr5 (157-237)||(9170776-9170857)
chr5 (22-110)||(23325928-23326016)
chr5 (22-110)||(41144530-41144618)
chr5 (115-175)||(18695597-18695657)
chr5 (22-110)||(23333979-23334067)
chr5 (115-164)||(224551-224600)
chr5 (22-110)||(11797545-11797633)
[»] chr6 (5 HSPs)
chr6 (23-110)||(11722803-11722890)
chr6 (99-225)||(138102-138229)
chr6 (99-225)||(146123-146250)
chr6 (40-110)||(21777496-21777566)
chr6 (123-225)||(30232803-30232905)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 35296923 - 35296703
Alignment:
Q  17 aaatagtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatc 116  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  35296923 aaatagtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggtacccttggttttgctccgttagtcaaattgatc 35296824  T
Q  117 atctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||    
T  35296823 atctccgttaattttttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacatataatgagccaccagcacctaattttt 35296724  T
Q  217 tcacttttcatcatcttccct 237  Q
    |||||||||||||||||||||    
T  35296723 tcacttttcatcatcttccct 35296703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 41329570 - 41329373
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||| ||||||||||||| |||||||||||| |||||| |||| |||||| |||||||||||||  ||     
T  41329570 gtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttactccgtcagtcaaattgatcccctc 41329471  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttttca 219  Q
    |||||  |||||||| | ||||||||||||| || | |||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  41329470 cgttagatttttaatgtttaaattttttgatgtgatattaaccgtttgattgcatgtccattatacctatagtgagccatcggcacctaattttttca 41329373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 32653498 - 32653689
Alignment:
Q  41 gtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaattttttaatctct 140  Q
    |||||||||||| || |||||||||||||| |||||||| ||| ||||||||||||||||||  |||| | || ||   | ||||| |||||||||  ||    
T  32653498 gtttacattttggtctcataaattgtaaaactcacatttcggtccccttggttttgctccgtcggtcagaatggtcccatccgttagttttttaatgact 32653597  T
Q  141 aaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttttcacttttcatcatct 232  Q
    ||| ||||||||||  |||||||||||| |||||||||||||||||| || ||||  |  |||||||||||||||||   ||||||||||||    
T  32653598 aaaatttttgatatcattttaaccgtttgattgcatgtccattatacctacagtgaactgtcagcacctaatttttttgtttttcatcatct 32653689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 666740 - 666948
Alignment:
Q  20 tagtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatc 119  Q
    |||||| ||||||||||  |||||| |||||||||| ||||| |  ||||||| | |||| ||| ||  | ||||||||||||||||||| ||| ||  |    
T  666740 tagtcccctaaataattatcagttttcattttgatctcataactcataaaattaatatttcggtccctcttgttttgctccgttagtcaatttggtcccc 666839  T
Q  120 tgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacct-aattttttc 218  Q
    | ||||| | ||||||| || |||||||||||| || |||||||| |||||||||||||| ||||||  |  ||||  || ||||||| | |||||||||    
T  666840 tccgttagtattttaatgtcgaaattttttgatttgattttaaccatttaattgcatgtctattatatttccagtgaaccgtcagcacttaaattttttc 666939  T
Q  219 acttttcat 227  Q
    |||||||||    
T  666940 acttttcat 666948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 39981334 - 39981421
Alignment:
Q  23 tcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||| ||| |||||||    
T  39981334 tcctctaaataattgtgc-gtttacattttggtcccataaattgtaaaattcacattttggtccttttggttttgcttcgtcagtcaaa 39981421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 17288245 - 17288129
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaatttttt--- 217  Q
    ||||| ||||||||| |||||||||||||||||| |||||||  ||| |||||||||||||| ||  | ||||||  || |||||||||||||||||       
T  17288245 cgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccattgtatttaatagtgaaccgtcagcacctaattttttttc 17288146  T
Q  218 cacttttcatcatcttc 234  Q
    |||||||||||||||||    
T  17288145 cacttttcatcatcttc 17288129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 41515109 - 41515223
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaa-ttttttca 219  Q
    ||||||||||||||| |||||| ||||| ||||| |||||||| ||| |||||||||||||||||  | ||||||  || || |||||||| ||||||||    
T  41515109 cgttaattttttaatgtctaaagttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaatttttttca 41515208  T
Q  220 cttttcatcatcttc 234  Q
    |||||||| ||||||    
T  41515209 cttttcataatcttc 41515223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 43442863 - 43442705
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| |||| |||||||  |||| ||| ||| |||||||| | |||||||  |||||||||| ||  | ||||||||||||||||||| ||| ||  ||     
T  43442863 gtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagtcaatttggtcccctc 43442764  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtcc 180  Q
    ||||| | ||||||| ||||||||||||||| || |||||||  ||| |||||||||||    
T  43442763 cgttagtcttttaatgtctaaattttttgatttgattttaacaatttgattgcatgtcc 43442705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 41328235 - 41328309
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttg 96  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||    
T  41328235 gtcctctaaataattatgc-gtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttg 41328309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 28326393 - 28326329
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattata 186  Q
    ||||| ||||||||| |||||||||||| ||||| |||||||| ||| |||||||||||||||||    
T  28326393 cgttagttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtccattata 28326329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 3330818 - 3330918
Alignment:
Q  132 ttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttttcacttttcatcatc 231  Q
    ||||| ||||||||||||||| || |||||||||||| ||||||||| |||| ||  |||||||  || ||||||| ||||||||  | |||||||||||    
T  3330818 ttaatgtctaaattttttgatttgattttaaccgtttgattgcatgttcattgtatctatagtgaaccgtcagcacttaattttt--atttttcatcatc 3330915  T
Q  232 ttc 234  Q
    |||    
T  3330916 ttc 3330918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 26146730 - 26146604
Alignment:
Q  99 ccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtg 197  Q
    ||||||||||||||||||  || ||||| ||||||||| |||||| ||||||||||| ||||||||     |||||||||||||| ||  | ||||||      
T  26146730 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgattttaaccacccgattgcatgtccattgtagttaatagtgaa 26146631  T
Q  198 ccatcagcacctaattttttcactttt 224  Q
    |  ||| ||||||||||||||||||||    
T  26146630 ctctcatcacctaattttttcactttt 26146604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 44376718 - 44376644
Alignment:
Q  92 ttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgt 166  Q
    ||||||||| ||||||||||| |||  || ||||| ||||||||| ||||||||||||||| || ||||||||||    
T  44376718 ttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgattttaaccgt 44376644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 44385585 - 44385511
Alignment:
Q  92 ttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgt 166  Q
    ||||||||| ||||||||||| |||  || ||||| ||||||||| ||||||||||||||| || ||||||||||    
T  44385585 ttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgattttaaccgt 44385511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 45721779 - 45721655
Alignment:
Q  112 tgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattata-catatagtgtgccatcagcaccta 210  Q
    ||||| ||| ||||| ||||||||| |||||||||||| || || |||||||| ||| ||||||||| |||| || |  ||| ||  || |||| |||||    
T  45721779 tgatcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgttcattgtatctaataatgaaccgtcagtaccta 45721680  T
Q  211 a-ttttttcacttttcatcatcttc 234  Q
    | ||||||||||||| |||||||||    
T  45721679 atttttttcactttttatcatcttc 45721655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 10955871 - 10956022
Alignment:
Q  32 taatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaatttt 131  Q
    |||||||  |||| ||||||||| |||||| || ||||||  || |||| || ||  | ||||||||||||||||||| ||  ||  || |||||  |||    
T  10955871 taatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgctccgttagtcaatttagtcccctccgttagattt 10955970  T
Q  132 ttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    ||||| |||||| |||||||| || |||||||| ||| ||||  ||||||||    
T  10955971 ttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccatt 10956022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 29589269 - 29589162
Alignment:
Q  123 gttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttttcactt 222  Q
    |||| ||||||||| | |||| |||||||| || |||||||| ||| ||| ||| |||||||||  |||||||   | ||| ||| ||||||||| ||||    
T  29589269 gttagttttttaatgtttaaaatttttgatttgattttaaccatttgatttcatatccattatatttatagtgaatcgtcatcacttaatttttttactt 29589170  T
Q  223 ttcatcat 230  Q
    ||||||||    
T  29589169 ttcatcat 29589162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 14744074 - 14744294
Alignment:
Q  17 aaatagtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatc 116  Q
    |||||||||||||||||||| || |||||||||||| || |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  14744074 aaatagtcctctaaataattcgcggtttacattttggtctcataaattgtaaaactcacattttggtttcattggttttgctccgttagtcaaattgatc 14744173  T
Q  117 atctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||||    
T  14744174 atctccgttaattttttaatgtctaaattttttgatatgattttaaccgattgattgcatgtccattatacatatagtgaaccatcagcacctaattttt 14744273  T
Q  217 tcacttttcatcatcttccct 237  Q
    |||||||||||||||||||||    
T  14744274 tcacttttcatcatcttccct 14744294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 49381054 - 49380860
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||| ||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||  ||     
T  49381054 gtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggtacccttggttttgctccgtcagtcaaattgatcccctc 49380955  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    ||||| ||||||||| | |||| ||||||||||| | ||| |||||| |||||||||||||||||| ||||||| || ||| |||||||||||||    
T  49380954 cgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagctatcggcacctaattttt 49380860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 13622058 - 13621864
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||| ||||||||||||| |||||||||||| |||||| ||||||| ||| |||||||||||||  ||     
T  13622058 gtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttgcttcgtcagtcaaattgatcccctc 13621959  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
     |||| ||||||||| | |||| ||||||||||| | ||| |||||| |||||||||||||||||| ||||||| |||||| |||||||||||||    
T  13621958 agttagttttttaatatttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccatcggcacctaattttt 13621864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 13620936 - 13621024
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||||||||||| ||| |||||||||||| || |||||||||||||| |||||||||||| | |||||||||||||||| |||||||    
T  13620936 gtcctctaaataattatgc-gtttacattttggtctcataaattgtaaaactcacattttggtcctcttggttttgctccgtcagtcaaa 13621024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 47766958 - 47766840
Alignment:
Q  118 tctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattata-catatagtgtgccatcagcacctaa-tttt 215  Q
    ||||||||| ||||||||| |||||||||||| || || |||||||| ||| |||||||||||||| || |  ||||||  || ||||||||||| ||||    
T  47766958 tctgcgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaattttt 47766859  T
Q  216 ttcacttttcatcatcttc 234  Q
    ||||||||| |||||||||    
T  47766858 ttcacttttgatcatcttc 47766840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 49379717 - 49379797
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgt 102  Q
    ||||||||||||||| ||| ||||| |||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  49379717 gtcctctaaataattatgc-gtttatattttggtcccataaattgtaaaactcacattttagttctcttggttttgctccgt 49379797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 48253039 - 48253107
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    |||||| ||||| ||||||||| ||||||||||||||| || |||||||| ||| ||||||||||||||    
T  48253039 tcatctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccatt 48253107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 10301848 - 10301705
Alignment:
Q  92 ttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-a 190  Q
    |||||||||||||||||| ||| |   ||  |||| ||||||||| ||||||||||||||| || |||||||| ||| |||| ||||||||| ||  | |    
T  10301848 ttttgctccgttagtcaatttggtgtcctctgttagttttttaatgtctaaattttttgatttgattttaaccatttgattgaatgtccattgtatttaa 10301749  T
Q  191 tagtgtgccatcagcacctaa-ttttttcacttttcatcatcttc 234  Q
     ||||  |||||||||| ||| ||||||||| |||||||||||||    
T  10301748 cagtgaaccatcagcacataatttttttcac-tttcatcatcttc 10301705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 53809503 - 53809439
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtc 179  Q
    |||||| ||||| ||||||||| |||||||||||||||||  |||||||| ||| ||||||||||    
T  53809503 tcatctccgttagttttttaatgtctaaattttttgatataattttaaccatttgattgcatgtc 53809439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 10339992 - 10339878
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaa-ttttttca 219  Q
    ||||| ||||||||| ||||||||||||||| || ||| |||| ||| |||| ||||||||| ||  | | ||||  || ||||||| ||| ||||||||    
T  10339992 cgttagttttttaatgtctaaattttttgatttgatttgaaccatttgattgaatgtccattgtatttaacagtgaaccgtcagcacataatttttttca 10339893  T
Q  220 cttttcatcatcttc 234  Q
    |||||||||||||||    
T  10339892 cttttcatcatcttc 10339878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 5122432 - 5122541
Alignment:
Q  128 ttttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaat-tttttcacttttca 226  Q
    ||||||||| |||||  ||||| ||||| ||||||| |||||||| |||||||||| ||  | ||||   ||||||  ||||||| |||||||||||| |    
T  5122432 ttttttaatgtctaatattttttatatgattttaactgtttaattacatgtccattgtatctctagttaaccatcaatacctaatgtttttcacttttga 5122531  T
Q  227 tcatcttccc 236  Q
    ||||||||||    
T  5122532 tcatcttccc 5122541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 7271594 - 7271533
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    ||||| ||||||||| |||||| |||||||| |  |||||||| ||| ||||||||||||||    
T  7271594 cgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccatt 7271533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 37415035 - 37415099
Alignment:
Q  46 cattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||| || ||||| | |||||||  |||||||||||||  | ||||||||||||||||||||    
T  37415035 cattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagtcaaa 37415099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 4919843 - 4920057
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatct 120  Q
    ||||||||||||||| |||| |||||| |||| ||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||||  ||    
T  4919843 gtcctctaaataattatgca-tttacaatttggtcccataaattataaaatccacattttggtccccttggttttgctccgtcagtcaaattgatcccct 4919941  T
Q  121 gcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaatttt--ttc 218  Q
     | ||| ||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||  ||||||||| ||||||||  |||    
T  4919942 ccattagttttttaacatctaaattttttgatatgattttaaccgtttgattgcatgtccattatacctatagtgaaccatcagcatctaatttttgttc 4920041  T
Q  219 acttttcatcatcttc 234  Q
    | ||||||||||||||    
T  4920042 atttttcatcatcttc 4920057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 28610043 - 28610232
Alignment:
Q  27 ctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgtta 126  Q
    ||||||||||   ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||   | |||||    
T  28610043 ctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccatccgtta 28610142  T
Q  127 attttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
     ||||||||| | |||| ||||||||||| | ||| |||||| ||||||||| |||||||| ||||||| ||| || |||||||||||||    
T  28610143 gttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgttcattatacctatagtgagccgtcggcacctaattttt 28610232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 45699568 - 45699759
Alignment:
Q  45 acattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaat 144  Q
    |||||||| | ||||||||||||||| ||||||||| || || ||||||||||||||| ||||||||||| |  || | ||| ||||||||| |||||||    
T  45699568 acattttggttccataaattgtaaaactcacattttagtccctttggttttgctccgtcagtcaaattgaccccctccattagttttttaatatctaaat 45699667  T
Q  145 tttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaatttt--ttcacttttcatcatcttc 234  Q
    ||||||||||| ||||||| |||| ||||||||||||| |||| |||||||  || ||| || ||||||||  |||| ||||||||||||||    
T  45699668 tttttgatatgattttaactgtttgattgcatgtccatcatacctatagtgaaccgtcaacatctaatttttgttcatttttcatcatcttc 45699759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 19397546 - 19397707
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||  |||||||||||||| ||||||||||| ||||| | |||||||||| ||  | |||||||||||||||||| |  | ||   |     
T  19397546 gtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccctctcgttttgctccgttagtcataaaggtcccttc 19397645  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    ||||| ||||||||| ||||||  |||||||||  |||||||| ||  ||||||||||||||    
T  19397646 cgttatttttttaatgtctaaaacttttgatataattttaaccattggattgcatgtccatt 19397707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 28611352 - 28611264
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||| |  ||||||||||||||| |||||||    
T  28611352 gtcctctaaataattatgc-gtttacattttggtcccataaattgtaaaattcatattttggtccttttggttttgctccgtcagtcaaa 28611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 1147842 - 1147969
Alignment:
Q  99 ccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtg 197  Q
    ||||||||||||||||||  || ||||| ||||||||| |||||| ||||||||||| |||||||| |   |||||||||||||| ||  | ||||||      
T  1147842 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgattttaaccatccgattgcatgtccattctagttaatagtgaa 1147941  T
Q  198 ccatcagcacctaattttttcacttttc 225  Q
    |||||| || ||||||||||||||||||    
T  1147942 ccatcatcatctaattttttcacttttc 1147969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 4921158 - 4921081
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctc 99  Q
    ||||||||||||||| ||| |||||||||||  ||||||||||||||||| |||||||||||| | |||||||||||||    
T  4921158 gtcctctaaataattatgc-gtttacattttagtcccataaattgtaaaactcacattttggtcctcttggttttgctc 4921081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 45699535 - 45699580
Alignment:
Q  41 gtttacattttgatcccataaattgtaaaattcacattttggttcc 86  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  45699535 gtttacattttggtcccataaattgtaaaattcacattttggttcc 45699580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 19398895 - 19398814
Alignment:
Q  27 ctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtca 108  Q
    ||||||||||  | |||||||||||| |||||||||||||||||   |||||||||| ||  | ||||||||||||||||||    
T  19398895 ctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccctcttgttttgctccgttagtca 19398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 8321342 - 8321249
Alignment:
Q  23 tcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatc 116  Q
    |||||||||||||| ||| |||||||||||| ||||||||||| |||||   ||||||| || || ||  |||||||||||  ||||||||||||    
T  8321342 tcctctaaataattatgc-gtttacattttggtcccataaattttaaaaccaacattttagtccctttaattttgctccgtcggtcaaattgatc 8321249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 51446943 - 51446729
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatct 120  Q
    ||||||||||||||| |||| ||||||||||| || ||||||||||||||  ||||||||||| |||||||||||||||||| |||||||||||||  ||    
T  51446943 gtcctctaaataattatgca-tttacattttggtcacataaattgtaaaacccacattttggtccccttggttttgctccgtcagtcaaattgatcccct 51446845  T
Q  121 gcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaatttt--ttc 218  Q
     ||||| ||||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||||| ||| |||  || |||||| ||||||||  |||    
T  51446844 ccgttagttttttaatatctaaattttttgatatgattttaactgtttgattgcatgtccattatacctattgtgaaccgtcagcatctaatttttgttc 51446745  T
Q  219 acttttcatcatcttc 234  Q
    | ||||||||||||||    
T  51446744 atttttcatcatcttc 51446729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 28051702 - 28051514
Alignment:
Q  27 ctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattga-tcatctgcgtt 125  Q
    ||||||||||   ||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||  ||||    
T  28051702 ctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttgattttgctccgttagtcaaattgattcatc--cgtt 28051605  T
Q  126 aattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    ||||||||||| | |||| ||||||||||| | ||| | |||| |||||||||||||||||| ||||||| ||| || |||||||||||||    
T  28051604 aattttttaatgtttaaaatttttgatatgatattagctgtttgattgcatgtccattatacctatagtgagccgtcggcacctaattttt 28051514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 14479615 - 14479421
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||||||  ||     
T  14479615 gtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttggttttgctccatcagtcaaattgatcccctc 14479516  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    ||||| |||||||||   |||| ||||||||||  | ||| |||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  14479515 cgttagttttttaatgattaaaatttttgatattatattagccgtttgattgcatgtccattatacctatagtgagccgtcagcacctaattttt 14479421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 40533704 - 40533489
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||  |||||||||||||| | |||||||||||||||   |||||||||| ||  | | ||||||||||||||||||  | ||  ||     
T  40533704 gtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccctctcgctttgctccgttagtcaaaaaggtcccctc 40533605  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaatt--ttttc 218  Q
    ||||||||||||||| ||||||  |||||||||| |||||||| ||  |||||||||||||| ||  | ||||||  || || ||||||||||  |||||    
T  40533604 cgttaattttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccgtcggcacctaatttattttc 40533505  T
Q  219 acttttcatcatcttc 234  Q
     |||||||||||||||    
T  40533504 gcttttcatcatcttc 40533489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 28050356 - 28050425
Alignment:
Q  41 gtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  28050356 gtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgttagtcaaa 28050425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 40634796 - 40634707
Alignment:
Q  17 aaatagtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagt 106  Q
    |||| |||| |||||||||||||||||||||||||||||| ||||||  ||||| ||||||||| || |||||| |||||||||||||||    
T  40634796 aaatggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacattttcgtccccttgattttgctccgttagt 40634707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 14478282 - 14478370
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||||    |||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||| |||||||    
T  14478282 gtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctctgggttttgctccgtcagtcaaa 14478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 12667377 - 12667218
Alignment:
Q  20 tagtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatc 119  Q
    |||||||||||||||||  |||||| ||||||| ||| | || | |||||||| |||||| ||| ||  | ||||||||||||||||||| ||| ||  |    
T  12667377 tagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccctcttgttttgctccgttagtcaacttggtcccc 12667278  T
Q  120 tgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtc 179  Q
    | ||||| ||||||||| || |||||||||||| || |||||| | ||| ||||||||||    
T  12667277 tccgttagttttttaatgtcgaaattttttgatttgattttaatcatttgattgcatgtc 12667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 51445606 - 51445694
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||| | |||||||||| || || |||||||    
T  51445606 gtcctctaaataattatgc-gtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatctgtcagtcaaa 51445694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 14429845 - 14429918
Alignment:
Q  100 cgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattg 173  Q
    |||||||||||||||||||||  |||| ||||||||| |||||  || |||||||| |||||||||||| ||||    
T  14429845 cgttagtcaaattgatcatctctgttatttttttaatgtctaatattcttgatatgattttaaccgtttgattg 14429918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 26803211 - 26803106
Alignment:
Q  130 ttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatat-agtgtgccatcagcacctaattttttcacttttcatc 228  Q
    ||||||| | |||| || |||||||| |||||||| ||| |||||||||||||| ||  ||  ||||  || ||| ||||||||||||||||||||||||    
T  26803211 ttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaacagtgaaccttcaccacctaattttttcacttttcatc 26803112  T
Q  229 atcttc 234  Q
    ||||||    
T  26803111 atcttc 26803106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 48528987 - 48528782
Alignment:
Q  32 taatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaatttt 131  Q
    |||||||  |||||||||||| |||||||| | |||||||  ||||||| || ||  |  |||| ||||||||||||| ||| ||   | ||||| ||||    
T  48528987 taatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgttagtcaatttggtcccatccgttagtttt 48528888  T
Q  132 ttaatctctaaattttttgatatggttttaaccgttta-attgcatgtccattatacata-tagtgtgccatcagcacctaatt-ttttcacttttcatc 228  Q
    ||||| ||||||  ||||||| || |||||| |  ||| |||||||||||||| ||  || |||||  || ||| ||||||||| |||||||||||||||    
T  48528887 ttaatatctaaaacttttgatttgattttaaaccattagattgcatgtccattgtatttaatagtgaaccgtcaacacctaattattttcacttttcatc 48528788  T
Q  229 atcttc 234  Q
    ||||||    
T  48528787 atcttc 48528782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 40110654 - 40110542
Alignment:
Q  123 gttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatag-tgtgccatcagcacctaattttttcact 221  Q
    |||| ||||||||| | |||| || |||||||| |||||||| ||| |||||||||||||| ||  ||  | ||  || ||| |||||||||||||||||    
T  40110654 gttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcact 40110555  T
Q  222 tttcatcatcttc 234  Q
    |||||||||||||    
T  40110554 tttcatcatcttc 40110542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 50679824 - 50679773
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattg 173  Q
    ||||| ||||||||| |||||||||||||||||| ||| |||||||| ||||    
T  50679824 cgttagttttttaatgtctaaattttttgatatgttttcaaccgtttgattg 50679773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 48527550 - 48527611
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggt 83  Q
    |||| |||| |||||||  |||||||||||| |||||||| | |||||||| ||||||||||    
T  48527550 gtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggt 48527611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 24516448 - 24516508
Alignment:
Q  123 gttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    |||| ||||||||| | |||| || |||||||| |||||||| ||| ||||||||||||||    
T  24516448 gttagttttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccatt 24516508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 52137442 - 52137656
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||||||||||||||    |||||||||||| |||||||||||||||||   |||||||||| | ||||||||| ||||||  |||||||| |||||||     
T  52137442 gtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcctcttggttttactccgtcggtcaaattcatcatctc 52137541  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaa--ttttttca 219  Q
    ||||| ||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||  || |||||| ||||  ||||||||    
T  52137542 cgttagtttttcaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacttatagtgaaccgtcagcagctaattttttttca 52137641  T
Q  220 cttttcatcatcttc 234  Q
     ||||||||||||||    
T  52137642 tttttcatcatcttc 52137656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 26495138 - 26495332
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||  ||     
T  26495138 gtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccccttggttttgctccgtcagtcaaattgatcccctc 26495237  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    ||||| ||||||||| | |||| ||||||||||| | ||| |||||| ||||||||||  |||||| ||||||| |||||| |||||||||||||    
T  26495238 cgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtctgttatacctatagtgagccatcggcacctaattttt 26495332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 36244849 - 36244673
Alignment:
Q  40 agtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaattttttaatctc 139  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||| |||||||||||||  || ||||| ||||||||| |     
T  36244849 agtttacattttgatcccataaattgtaaaactcacatttttgtccccttgattttgctccgtcagtcaaattgatcccctccgttagttttttaatgtt 36244750  T
Q  140 taaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    |||| | ||||||||| | ||| |||||| |||||||||||||||||| ||||||  ||| || |||||||||||||    
T  36244749 taaaatgtttgatatgatattagccgtttgattgcatgtccattatacctatagtcagccgtcggcacctaattttt 36244673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 8363489 - 8363295
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||  ||     
T  8363489 gtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccctttggttttgctccgttagtcaaattgatcccctc 8363390  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    ||||| ||||||||| | |||| ||||||||||| | ||   ||||| |||||||||||||||||| |||| || |||||| | |||||||||||    
T  8363389 cgttagttttttaatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcggtacctaattttt 8363295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 56156951 - 56157145
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||| | ||||||||| |  ||     
T  56156951 gtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtctccttggttttgctccgtcaatcaaattgaccccctc 56157050  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    ||||| ||||||||| | |||| ||||||||||| | ||| ||||||  ||||||||||||||||| ||||||| ||| ||  |||||| |||||    
T  56157051 cgttagttttttaatgtttaaaatttttgatatgatattagccgtttggttgcatgtccattatacctatagtgagccgtcgacacctagttttt 56157145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 44500014 - 44499872
Alignment:
Q  92 ttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatat 191  Q
    |||||||||||||||||||||||||  || ||||| ||| ||||| |||| |||||||||| || |||||||||||| |||||||||||||| ||  |||    
T  44500014 ttttgctccgttagtcaaattgatccactccgttagtttgttaatgtctatattttttgatttgattttaaccgtttgattgcatgtccattgtatctat 44499915  T
Q  192 agtgtgccatcagcacctaattttttcacttttcatcatcttc 234  Q
    ||||  || ||||||||||||||||| | ||||||||||||||    
T  44499914 agtgaaccgtcagcacctaatttttttatttttcatcatcttc 44499872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 46796029 - 46795915
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaa-ttttttca 219  Q
    ||||| ||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||| ||  | ||||||  || || |||||||| ||||||||    
T  46796029 cgttagttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaatttttttca 46795930  T
Q  220 cttttcatcatcttc 234  Q
    |||||||||||||||    
T  46795929 cttttcatcatcttc 46795915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 47667287 - 47667405
Alignment:
Q  118 tctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattata-catatagtgtgccatcagcacctaa-tttt 215  Q
    ||||||||| ||||||||| |||||||||||| || || |||||||| ||| |||||||||||||| || |  ||||||  || ||||||||||| ||||    
T  47667287 tctgcgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaattttt 47667386  T
Q  216 ttcacttttcatcatcttc 234  Q
    |||||||||||||||||||    
T  47667387 ttcacttttcatcatcttc 47667405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 36243535 - 36243623
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||| ||||||||||   ||||||||||||| ||| ||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  36243535 gtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttagttttgctctgttagtcaaa 36243623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 36846654 - 36846496
Alignment:
Q  27 ctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgtta 126  Q
    |||| |||||||  |||| ||||||| |||||||| | |||||||  |||||||||| ||  | ||||||||||||| ||||| ||| ||   | ||||     
T  36846654 ctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgtcaatttggtcccttccgtt- 36846556  T
Q  127 attttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattata 186  Q
    | |||||||| ||||||||||||||| || |||||||| ||| |||||||||||||||||    
T  36846555 agtttttaatgtctaaattttttgatttgattttaaccatttgattgcatgtccattata 36846496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 56157596 - 56157508
Alignment:
Q  22 gtcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||||||||||| ||| |||||||||||| |  |||||||||||||| |||||||||||| || ||||||||||||| |||||||||    
T  56157596 gtcctctaaataattatgc-gtttacattttggtttcataaattgtaaaactcacattttggtccctttggttttgctccattagtcaaa 56157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 29665584 - 29665516
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    |||||| ||||||||||||||| ||||||||||||||| || |||||||| ||| ||||||||||||||    
T  29665584 tcatctccgttaattttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccatt 29665516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 26496390 - 26496321
Alignment:
Q  41 gtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||| ||||||||||||||||| |||||||||||| | ||| | |||||||||| |||||||    
T  26496390 gtttacattttggtcccataaattgtaaaactcacattttggtcctcttaggtttgctccgtcagtcaaa 26496321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 26631295 - 26631104
Alignment:
Q  46 cattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaatt 145  Q
    ||||||| || ||||| | |||||||  |||||||||||||  | ||||||||||||||||||| ||| ||  || ||||  |  |||||| ||||||||    
T  26631295 cattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagtcaatttggtcccctccgtttgtcctttaatgtctaaatt 26631196  T
Q  146 ttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaa--ttttttcacttttcatcatcttc 234  Q
    ||||||| || ||||||||  || |||||||||| ||| ||  | | ||||   |||||||||||||  ||||||||||||| |||||||||    
T  26631195 ttttgatttgattttaaccacttgattgcatgtctattgtatttaacagtgaatcatcagcacctaattttttttcacttttaatcatcttc 26631104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 38554035 - 38554156
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaa-t 212  Q
    |||||| | ||| ||||||||| |||||||||||||||||| |||||||| ||| || ||| ||||||| ||  | ||||||  || ||| ||| ||| |    
T  38554035 tcatctccattagttttttaatgtctaaattttttgatatgattttaaccatttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaatt 38554134  T
Q  213 tttttcacttttcatcatcttc 234  Q
    ||||||||||||||||||||||    
T  38554135 tttttcacttttcatcatcttc 38554156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 20620155 - 20620243
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||||   ||||||||||||| |||||||| |||||||| ||||| ||  || | |||||||||| ||||| |||||||    
T  20620155 gtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcagtcaaa 20620243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 41348358 - 41348465
Alignment:
Q  128 ttttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatag-tgtgccatcagcacctaattttttcacttttca 226  Q
    ||||||||| | |||| ||||||||||| |||||| | ||| |||||||||||||| ||  ||  | ||  || ||| ||||||||||||||||||||||    
T  41348358 ttttttaatgtataaaatttttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttca 41348457  T
Q  227 tcatcttc 234  Q
    ||||||||    
T  41348458 tcatcttc 41348465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 307815 - 307747
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    |||||| ||||  ||||||||| | |||||||||||||||| |||||||| | | ||||||||||||||    
T  307815 tcatctccgttggttttttaatgtttaaattttttgatatgattttaaccatatgattgcatgtccatt 307747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 20625604 - 20625516
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||||   ||||||||||||| |||||||| |||||||| | ||| ||  || | |||||||||| ||||| |||||||    
T  20625604 gtcctctaaataattatgagtttacattttggtcccataagttgtaaaacttacagttgagtcctcttggttttggtccgtcagtcaaa 20625516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 52138893 - 52138807
Alignment:
Q  23 tcctctaaataatt-tgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||| ||| ||||| ||||||||| |||||||||||| |  | ||||||||| | ||||||||||||||||| ||||||    
T  52138893 tcctctaaataattatgc-gtttatattttgatcacataaattgtaagaccc-cattttggtcctcttggttttgctccgttggtcaaa 52138807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 669667 - 669548
Alignment:
Q  99 ccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgc 198  Q
    |||| |||||||||| ||  || | ||||| ||||||| ||| ||| | || ||| | |||||||||||| |||||||||||||||||  ||  ||| ||    
T  669667 ccgtcagtcaaattggtccactccattaatgttttaatgtctgaatatatttatacgattttaaccgtttgattgcatgtccattatatctacggtgagc 669568  T
Q  199 catcagcacctaattttttc 218  Q
    ||||| ||| ||||||||||    
T  669567 catcatcacttaattttttc 669548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 1521294 - 1521233
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggt 83  Q
    ||||||||| |||||||  |||| |||||||||||||||| | |||||||  ||||||||||    
T  1521294 gtcctctaactaatttgttgttttcattttgatcccataattcgtaaaatcaacattttggt 1521233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 6911 - 7123
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||||||||||||||    |||||||||||| |||||||||||||||||   ||||||||||||| |||||||||||||||  ||||||||||||  ||     
T  6911 gtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggttcctttggttttgctccgtcggtcaaattgatc-cctc 7009  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaattttttcac 220  Q
    ||||| ||||| ||| |||||||||||||||||  |||||||||||| |||||||||||||||||  | ||||||  || ||| |||||||||||||| |    
T  7010 cgttagtttttcaatatctaaattttttgatataattttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaacacctaattttttcgc 7109  T
Q  221 ttttcatcatcttc 234  Q
    ||||||||||||||    
T  7110 ttttcatcatcttc 7123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 8271 - 8196
Alignment:
Q  41 gtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatc 116  Q
    |||||||||||| |||||||| | |||||||  |||||||||| ||  | ||||| ||||||||||||| ||||||    
T  8271 gtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgttagtcaatttgatc 8196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 38556 - 38750
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||| ||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||  ||     
T  38556 gtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctccgtcagtcaaattgatcccctc 38655  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    ||||| |||||||||   |||| ||||| ||||| | ||| |||||| |||||||||||||||||| ||||||| ||| || |||||||||||||    
T  38656 cgttagttttttaatgattaaaattttttatatgatattagccgtttgattgcatgtccattatacctatagtgagccgtcggcacctaattttt 38750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 9853602 - 9853756
Alignment:
Q  41 gtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaattttttaatctct 140  Q
    ||||| |||||| ||||||||||||||||| | | ||||||||  ||| ||||||||||||| |||||||||||||  || ||||| ||||||||| |||    
T  9853602 gtttatattttggtcccataaattgtaaaactaatattttggtctcctgggttttgctccgtcagtcaaattgatcccctccgttagttttttaatatct 9853701  T
Q  141 aaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtg 195  Q
    ||||||||||||||  |||||||||||| ||||||| |||||||||| |||||||    
T  9853702 aaattttttgatataattttaaccgtttgattgcatatccattatacctatagtg 9853756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 42793720 - 42793929
Alignment:
Q  27 ctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgtta 126  Q
    ||||||||||  ||||||| |||||| ||||||||||||||||||| |||||||||| ||  | ||||||||||||||||||||  | ||  ||  ||||    
T  42793720 ctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaaaaggtcccctctgtta 42793819  T
Q  127 attttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaa-ttttttcactttt 224  Q
    |||||||||| ||||||  |||||||||| |||||||| ||  |||||||||||||| ||  | ||||||  |||||  ||||||| ||||||| |||||    
T  42793820 attttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacacctaatttttttcgctttt 42793919  T
Q  225 catcatcttc 234  Q
    ||||||||||    
T  42793920 catcatcttc 42793929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 234
Target Start/End: Original strand, 24191463 - 24191606
Alignment:
Q  92 ttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatat 191  Q
    |||||||| |||| |||||||||||  || ||||| ||| ||||| ||||||||||||||| || |||||||||||| |||||||||||||| ||  |||    
T  24191463 ttttgctctgttactcaaattgatccactccgttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatctat 24191562  T
Q  192 agtgtgccatcagcacctaa-ttttttcacttttcatcatcttc 234  Q
    ||||  || ||||||||||| |||||| | ||||||||||||||    
T  24191563 agtgaaccgtcagcacctaattttttttatttttcatcatcttc 24191606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 38104 - 38212
Alignment:
Q  129 tttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaatttttt--cacttttc 225  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||  | | ||||  || |||||||||||||||||  ||||||||    
T  38104 tttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaatttttttccacttttc 38203  T
Q  226 atcatcttc 234  Q
    |||||||||    
T  38204 atcatcttc 38212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 9854979 - 9854891
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||||    |||||||||||| |||||||||||||||||| ||||||||||| | |||| ||||||||||| |||||||    
T  9854979 gtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcctcttgattttgctccgtcagtcaaa 9854891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 45396042 - 45395902
Alignment:
Q  98 tccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtg 197  Q
    ||||| |||||||||| ||  || ||||| ||| ||||| ||| |  ||||| ||| | |||||||||||| |||||||||||||| || |||||||       
T  45396042 tccgtcagtcaaattggtccactccgttagtttcttaatgtctgatattttttatacgattttaaccgtttgattgcatgtccattgtatatatagtaaa 45395943  T
Q  198 ccatcagcacctaatt-ttttcacttttcatcatcttccct 237  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  45395942 ccatcggcacctaatttttttcacttttcatcatcttccct 45395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 43203310 - 43203166
Alignment:
Q  92 ttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-a 190  Q
    ||||||||||| |||||| ||| ||  || ||||| ||||||||| ||||||||||||||| |  |||||| | ||| |||||||||||||| ||  | |    
T  43203310 ttttgctccgtcagtcaatttggtcccctccgttagttttttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccattgtatttaa 43203211  T
Q  191 tagtgtgccatcagcacctaa-ttttttcacttttcatcatcttc 234  Q
     ||||  | |||||||||||| |||||||||||||||||||||||    
T  43203210 aagtgaactatcagcacctaatttttttcacttttcatcatcttc 43203166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 31844394 - 31844598
Alignment:
Q  32 taatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaatttt 131  Q
    |||||||  |||| ||||||  |||| ||| | |||||||| |||||||||| ||  | ||||||||||||||||||| ||| ||  || ||||  |  |    
T  31844394 taatttgttgttttcattttagtcccgtaactcgtaaaattaacattttggtccctcttgttttgctccgttagtcaatttggtcccctccgtttgtcct 31844493  T
Q  132 ttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaa-ttttttcacttttcatca 229  Q
    ||||| |||||| |||||||| || ||||||||  || |||||||||| ||| ||  | | ||||  |||||||||||||| ||||||||||||| ||||    
T  31844494 ttaatttctaaaatttttgatttgattttaaccacttgattgcatgtctattgtaattaacagtgaaccatcagcacctaatttttttcacttttaatca 31844593  T
Q  230 tcttc 234  Q
    |||||    
T  31844594 tcttc 31844598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 36757217 - 36757166
Alignment:
Q  128 ttttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtc 179  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  36757217 ttttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtc 36757166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 39516510 - 39516385
Alignment:
Q  112 tgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattata-catatagtgtgccatcagcaccta 210  Q
    ||||| ||| ||||| ||||||||| |||||||||||| || || |||||||| ||| |||||||||||||| || |  ||||||  || |||||| |||    
T  39516510 tgatcctctccgttagttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcatcta 39516411  T
Q  211 a--ttttttcacttttcatcatcttc 234  Q
    |  |||||||| ||||||||||||||    
T  39516410 atcttttttcatttttcatcatcttc 39516385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 22621136 - 22621024
Alignment:
Q  123 gttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatag-tgtgccatcagcacctaattttttcact 221  Q
    |||| ||||||||| | |||| || |||||||| |||||| | ||| |||||||||||||| ||  ||  | ||  || ||| |||||||||||||||||    
T  22621136 gttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcact 22621037  T
Q  222 tttcatcatcttc 234  Q
    |||||||||||||    
T  22621036 tttcatcatcttc 22621024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 38697904 - 38697972
Alignment:
Q  42 tttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||||||| | |||||| |||||||||  |||||||||| ||  | ||||||||||||||||||||    
T  38697904 tttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgttagtcaaa 38697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 7770110 - 7770171
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    ||||| ||||||||| |||||||||||| || || |||||||| ||| |||| |||||||||    
T  7770110 cgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccatt 7770171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 7777787 - 7777848
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    ||||| ||||||||| |||||||||||| || || |||||||| ||| |||| |||||||||    
T  7777787 cgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccatt 7777848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 36940043 - 36939975
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    |||||| ||||||||||||||| |||||   |||||||||||||| |||| ||  |||||| |||||||    
T  36940043 tcatctccgttaattttttaatatctaataattttgatatggtttcaaccattcgattgcaggtccatt 36939975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 11796585 - 11796778
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctg 121  Q
    |||| ||||||||||   ||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||| | |||||||||||||   |     
T  11796585 gtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggt-cccttggttttgctccctcagtcaaattgatcccatc 11796683  T
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttt 216  Q
    || || ||||||||| | ||||  |||||||||| | ||| |||||| |||||||||||||||||| ||||||| ||| || ||| |||||||||    
T  11796684 cgctagttttttaatgtttaaaacttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccgtcggcatctaattttt 11796778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 10737019 - 10736824
Alignment:
Q  41 gtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaattgatcatctgcgttaattttttaatctct 140  Q
    |||| ||||||| |||||||| | |||||||  |||||||||| ||  | |||||||||||||| |||| ||| ||  || |||||| |||||||| |||    
T  10737019 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggtcccctccgttaactttttaatgtct 10736920  T
Q  141 aaattttttgatatggttttaaccgtttaattgcatgtccattata-catatagtgtgccatcagcacctaa-ttttttcacttttcatcatcttc 234  Q
    ||| |||||||| || |||||||| ||| |||| ||||||||| || |  ||||||  || ||| ||| ||| |||||||||||| ||||||||||    
T  10736919 aaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaacacttaatttttttcactttccatcatcttc 10736824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 9219262 - 9219353
Alignment:
Q  92 ttttgctccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccatt 183  Q
    ||||||||| |||||||| ||||||  || ||||| ||||||||| |||||| ||||| || || |||||||||||| ||||||||| ||||    
T  9219262 ttttgctccattagtcaatttgatcccctccgttagttttttaatgtctaaaattttttatttgattttaaccgtttgattgcatgttcatt 9219353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 5975870 - 5975932
Alignment:
Q  123 gttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattat 185  Q
    |||| ||||||||| |||||| ||||||||||| |||||||| ||| ||||||||||||||||    
T  5975870 gttagttttttaatgtctaaagtttttgatatgattttaaccatttgattgcatgtccattat 5975932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 8188203 - 8188098
Alignment:
Q  122 cgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtgccatcagcacctaattttttcac 220  Q
    ||||| ||||||||| |||||| ||| ||||||| |||||||| ||| |||||||||||||||||  | || |||  |||||| ||||||| ||||||||    
T  8188203 cgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaatggtgaaccatcaacacctaa-tttttcac 8188105  T
Q  221 ttttcat 227  Q
    |||||||    
T  8188104 ttttcat 8188098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 13520868 - 13520794
Alignment:
Q  36 ttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||| |||  | ||||||||| |||||  ||||||||||| | ||||||||||||||||||||||||    
T  13520868 ttgcagtttacactttagttccataaattataaaacccacattttggtcctcttggttttgctccgttagtcaaa 13520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 9170857 - 9170776
Alignment:
Q  157 ttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaatttttt-cacttttcatcatcttccct 237  Q
    |||||||| ||| |||||||||||||||||  ||| ||   |||||||||| ||||||||| ||||||||||||||||||||    
T  9170857 ttttaaccatttgattgcatgtccattatatctatggtaaaccatcagcacttaatttttttcacttttcatcatcttccct 9170776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 23325928 - 23326016
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||||   ||||||||||||| |||||||| |||||||| ||||| ||  || | |||||||||| ||||| |||||||    
T  23325928 gtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcagtcaaa 23326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 41144618 - 41144530
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||| |||| |||||||  |||| ||||||| ||||||||||| ||||||  || ||||||| || ||| |||||||||||||||||||    
T  41144618 gtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgttagtcaaa 41144530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 18695657 - 18695597
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgca 175  Q
    |||||| ||||| ||||||||| |||||| ||||||||||| ||| |||||||| ||||||    
T  18695657 tcatctccgttagttttttaatgtctaaaatttttgatatgttttcaaccgtttgattgca 18695597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 23334067 - 23333979
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||||||||||||||   ||||||||||||| |||||||| |||||||| | ||| ||  || | |||||||||| ||||| |||||||    
T  23334067 gtcctctaaataattatgagtttacattttggtcccataagttgtaaaactaacagttgagtcctcttggttttggtccgtcagtcaaa 23333979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 224600 - 224551
Alignment:
Q  115 tcatctgcgttaattttttaatctctaaattttttgatatggttttaacc 164  Q
    |||||| ||||| ||||||||| ||||||||||||||||||  |||||||    
T  224600 tcatctccgttagttttttaatgtctaaattttttgatatgactttaacc 224551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 11797633 - 11797545
Alignment:
Q  22 gtcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    |||| ||||||||||   ||||||||||||| || ||||| | |||||||  |||||||||| ||  | ||||| ||||||||||||||    
T  11797633 gtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgttagtcaaa 11797545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 11722803 - 11722890
Alignment:
Q  23 tcctctaaataatttgcagtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||||||||||    |||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||    
T  11722803 tcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctcttggttttgctccgtcagtcaaa 11722890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 138229 - 138102
Alignment:
Q  99 ccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtg 197  Q
    ||||| ||||||||||||  || ||||| ||||||||| |||||| |||||||| |  |||||||| |   |||||||||||||| ||  | |||||||     
T  138229 ccgttggtcaaattgatcccctccgttatttttttaatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaatagtgta 138130  T
Q  198 ccatcagcacctaattttttcacttttc 225  Q
    || ||| ||| ||| |||||||||||||    
T  138129 ccttcatcacgtaactttttcacttttc 138102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 146250 - 146123
Alignment:
Q  99 ccgttagtcaaattgatcatctgcgttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacat-atagtgtg 197  Q
    ||||| ||||||||||||  || ||||| ||||||||| |||||| |||||||| |  |||||||| |   |||||||||||||| ||  | |||||||     
T  146250 ccgttggtcaaattgatcccctccgttatttttttaatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaatagtgta 146151  T
Q  198 ccatcagcacctaattttttcacttttc 225  Q
    || ||| ||| ||| |||||||||||||    
T  146150 ccttcatcacgtaactttttcacttttc 146123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 21777566 - 21777496
Alignment:
Q  40 agtttacattttgatcccataaattgtaaaattcacattttggttcccttggttttgctccgttagtcaaa 110  Q
    ||||||||||||| |||||||| |||||||| ||||| ||  || | |||||||||| ||||| |||||||    
T  21777566 agtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcagtcaaa 21777496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 30232905 - 30232803
Alignment:
Q  123 gttaattttttaatctctaaattttttgatatggttttaaccgtttaattgcatgtccattatacatatagtgtgccatcagcacctaattttttcactt 222  Q
    |||| ||||||||| |||||| ||||| ||||  |||||||| |   |||||||||||||| ||  |||||||  || ||| ||||||||||||||| ||    
T  30232905 gttatttttttaatgtctaaacttttttatataattttaaccatccgattgcatgtccattgtagttatagtgaaccgtcatcacctaattttttcattt 30232806  T
Q  223 ttc 225  Q
    |||    
T  30232805 ttc 30232803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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