View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_high_12 (Length: 241)
Name: NF16590_high_12
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33520216 - 33519993
Alignment:
| Q |
1 |
atataatgttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagcctacaatattctccatgccctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
33520216 |
atataatgttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagtctacaatcttctccatgccctt |
33520117 |
T |
|
| Q |
101 |
tggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatatttatgtttattacaatcataaccgattatcaaataattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
33520116 |
tggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatatttatgttcattacaatcataaccgattatcaaataattg |
33520017 |
T |
|
| Q |
201 |
ttcatgaggtctcagcatactggt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
33520016 |
ttcatgaggtctcagcatactggt |
33519993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33495839 - 33496046
Alignment:
| Q |
1 |
atataatgttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagcctacaatattctccatgccctt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
33495839 |
atataatgttattgagtattcacacaccattttctgtaatatacatgggcaggttttggtattttatctttatgtagtctacaatcttctccatgccctt |
33495938 |
T |
|
| Q |
101 |
tggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatatttatgtttattacaatcataaccgattatcaaataattg |
200 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||| | ||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
33495939 |
tggaaccacaaagaaccttggcattcctgtctgctctaaacaaaagaaatcatatcaatatttatgttcattacaatcgtaaccgattatcaaataattg |
33496038 |
T |
|
| Q |
201 |
ttcatgag |
208 |
Q |
| |
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|||||||| |
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|
| T |
33496039 |
ttcatgag |
33496046 |
T |
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