View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16590_high_15 (Length: 204)
Name: NF16590_high_15
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 6490840 - 6490667
Alignment:
| Q |
16 |
gagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgtttttact |
115 |
Q |
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| T |
6490840 |
gagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacatggacttgtttttact |
6490741 |
T |
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| Q |
116 |
gtacaggaactaaatattgcaacatgttaacggaagacacaattttctgctccaatatcaagcatagaaatatt |
189 |
Q |
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| T |
6490740 |
gtacatgaactaaatattgcaacatgttaacggaagacgcaattttctgctccaatatcaagcatagaaatatt |
6490667 |
T |
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Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 38699841 - 38700007
Alignment:
| Q |
16 |
gagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgtttttact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
38699841 |
gagacaatacctccagcttctgtagaagtacaattgt----caaagttaaacaatcatgtata--agattagaagttgaagacacggacttgtttttact |
38699934 |
T |
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| Q |
116 |
gtacaggaactaaatattgcaacatgttaacggaagacacaattttctgctccaatatcaagcatagaaatatt |
189 |
Q |
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| T |
38699935 |
gtag-ggaactcaatattgcagcatgttaacggaagacgcaattttctgctccaatctcaagcatagaaatatt |
38700007 |
T |
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