View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16590_high_2 (Length: 659)
Name: NF16590_high_2
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 4167315 - 4166667
Alignment:
| Q |
1 |
tgctagtgtcgcgccaaggctatgtcccgtaacggttatgcttaattcttcgcctttgtaaagttcaataaggcgtcgcacttcttcaacaacggactcg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4167315 |
tgctagtgtcgcaccaaggctatgtcccgtaacggttatgcttaattcttcgcctttgtaaagttcaataaggcgtcgcacttcttcaacaacggactcg |
4167216 |
T |
|
| Q |
101 |
gataggctttgcacatgagccccttttgttttgtacaagctcatgaacccacactcaactttgggctttgattgggtctgtgtttgagtctgagtctgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4167215 |
gataggctttgcacatgagccccttttgttttgtacaagctcatgaacccacactcaactttgggctttgattgggtctgtgtttgagtctgtgtctgag |
4167116 |
T |
|
| Q |
201 |
catcctcgggtaaatcgactaattgggccctcatattttcagcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4167115 |
catcctcgggtaaatcgactaattgggccctcatattttcagcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccat |
4167016 |
T |
|
| Q |
301 |
tcttgcaatctctcttttatcgtcgcaaactgcaacatatccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4167015 |
tcttgcaatctctcttttatcgtcgcaaactgcaacatatccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccat |
4166916 |
T |
|
| Q |
401 |
ttaggtaatccaattgatgatgtggcatacagactcttggttactttataagatctctccggcaacgatacctgttgatgatggggtgcttcagttgttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
4166915 |
ttaggtaatccaattgatgatgtggcatacagactcttggttactttataagatctctccggcaacgacacctgttggtgatggggtgcttcagttgttg |
4166816 |
T |
|
| Q |
501 |
acatggcaggatcagcgtgaaaagcttgataagcagcttgaaccaaatcgccatatctaacaacctctcgccggaggttgtcgtccaagggatccaacat |
600 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4166815 |
acatggcaggatcagcatgaaaagcttgataagcagcttgaaccaaatcgccatatctaacaacctctcgccggaggttgtcatccaagggatccaacat |
4166716 |
T |
|
| Q |
601 |
ccccttccagtcattgctgccatgatattccctccactttctccctatg |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4166715 |
ccccttccagtcattgctgccatgatattccctccactttctccctatg |
4166667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 220 - 450
Target Start/End: Original strand, 41314614 - 41314844
Alignment:
| Q |
220 |
taattgggccctcatattttcagcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccattcttgcaatctctctttta |
319 |
Q |
| |
|
||||||||| | |||||| || |||||||| ||||| |||| |||||||| ||||| || ||||||||||| | ||| | ||||| |||||||||||| |
|
|
| T |
41314614 |
taattgggctcgcatattctcggcccattcaagacacgtggcggttccacggagagagataacaatatctctccttcctaatcttgaaatctctcttttg |
41314713 |
T |
|
| Q |
320 |
tcgtcgcaaactgcaacatatccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccatttaggtaatccaattgatg |
419 |
Q |
| |
|
|||| |||||| || |||||||| | |||||| || | |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
41314714 |
tcgttgcaaacagccacatatccaatccagctggatctctgggtcatccatccgagatccggagccacatcatcaacccatttaggtaaaccaattgatg |
41314813 |
T |
|
| Q |
420 |
atgtggcatacagactcttggttactttata |
450 |
Q |
| |
|
|||||||||| | ||| || ||||||||||| |
|
|
| T |
41314814 |
atgtggcatataaacttttagttactttata |
41314844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University