View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16590_low_1 (Length: 817)
Name: NF16590_low_1
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16590_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 740; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 6 - 805
Target Start/End: Complemental strand, 34440022 - 34439223
Alignment:
| Q |
6 |
tcgagtgagatgaatgtaaagtaatttatgtttgaatacatgtacaaatgaattgaaagataaatgtgaggcnnnnnnnnccatttgttgaggcaaaagc |
105 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34440022 |
tcgagtgagttgaatgtaaagtaatttatgtttggatacatgcacaaatgaattgaaagataaatgtgaggcaaaaaaaaccatttgttgaggcaaaagc |
34439923 |
T |
|
| Q |
106 |
ttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctactaaggatatccaaatatgtcaaaatcaattatatacctttaaaatca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34439922 |
ttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctactaaagatatccaaatatgtcaaaatcaattatatacctttaaaatca |
34439823 |
T |
|
| Q |
206 |
atttgtcttattaaatagatagaccaaacatacaatgacattttctgagatatgtaattcaaatttctaaagtcatttataaaattatttttctctaacc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34439822 |
atttgtcttattaaatagatagaccaaacatataatgacattttctgagatatgtaattcaaatttctaaagtcatttataaaattatttttctccaacc |
34439723 |
T |
|
| Q |
306 |
catcatcatagtttgagatgcaaaatacatggtcaatttcaaaaattgaaagcaagattaaaagcttgcaatgcaaggatcaatagaaaggtgcagtctg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34439722 |
catcatcatagtttgagatgcaaaatacatggtcaatttcaaaaattgaaagcaagattaaaagcttgcaatgcaaggatcaatagaaaggtgtagtctg |
34439623 |
T |
|
| Q |
406 |
acctatttctttctaatccaataaggaatccagcttcagccacaccagccaaaatggttccaaacttagcttgcttgtctcctattagagcatattcact |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34439622 |
acctatttctttctaatccaataaggaatccagcttcagccacaccagccaaaatggttccaaacttagcttgcttgtctcctattagagcatattcact |
34439523 |
T |
|
| Q |
506 |
cacaaaagcctatatataggacattccaattttccaagcgttaacttaacaaccaaattcttacacaatataaacaaatattttgatacaaaaagaagag |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34439522 |
cacaaaagcctatatataggacattccaattttccaagcgttaacttaacaaccaaattcttacacaatataaacaaatattttgatacaaaaagaagag |
34439423 |
T |
|
| Q |
606 |
agctacatgagaatgaatacaaaacctttggtccattgcgtggtgacttatcaaaattaacaccaagattaaacatagctcgagcatcatctttaggata |
705 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34439422 |
agcttcatgagaatgaatacaaaacctttggtccattgcgtggtgacttatcaaaattaacaccaagattaaacatagctcgagcatcatctttaggata |
34439323 |
T |
|
| Q |
706 |
attctggtaagaaatttagagtattagagagatatatgtaaaaattggaaactaaattatatacataattgtttatctaagaaagtgaaacatgaaattg |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34439322 |
attctggtaagaaatttagagtattagagagatatatgtaaaaattggaaaccaaattatatacataattgtttatctaagaaagtgaaacatgaaattg |
34439223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 352 - 648
Target Start/End: Complemental strand, 34450444 - 34450151
Alignment:
| Q |
352 |
tgaaagcaagattaaaagcttgcaatgcaaggatcaatagaaaggtgcagtctgacctatttctttctaatccaataaggaatccagcttcagccacacc |
451 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| | ||| |
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|
| T |
34450444 |
tgaaagcaagattgaaagcttgcatcgcaaggatcaatagaaaggtgtagtctgacctgtttctttctagtccaataaggaatccagcttcagatagacc |
34450345 |
T |
|
| Q |
452 |
agccaaaatggttccaaacttagcttgcttgtctcctattagagcatattcactcacaaaagcctatatataggacattccaattttccaagcgttaact |
551 |
Q |
| |
|
| | | || |||||| | ||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||| | |
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|
| T |
34450344 |
acctataagggttccgtgcctagctatgttggctcctattagagcatactcactcacaaaagcctatatatacgacattccaatttcacaagcattaatt |
34450245 |
T |
|
| Q |
552 |
taacaaccaaattcttacacaatataaacaaatattttgatacaaaaagaagagagctacatgagaatgaatacaaaacctttggtccattgcgtgg |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
34450244 |
caacaaccaaattcttacacaatataaacaaatagtttgatacaaa---aagagagctgcatgagcatgaatacgaaacctttggtccattgcgtgg |
34450151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 516 - 748
Target Start/End: Complemental strand, 34466241 - 34466010
Alignment:
| Q |
516 |
tatatataggacattccaattttccaagcgttaacttaacaaccaaattcttacacaatataaacaaatat--tttgatacaaaaagaagagagctacat |
613 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||| || |||||||||||||| ||||| ||| || ||||||||||||| ||||||||||||| |
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|
| T |
34466241 |
tatatataagacattccaattttccaagcattaactcaactactaaattcttacacaacataaaaaaaaatactttgatacaaaaataagagagctacat |
34466142 |
T |
|
| Q |
614 |
gagaatgaatacaaaacctttggtccattgcgtggtgacttatcaaaattaacaccaagattaaacatagctcgagcatcatctttaggataattctggt |
713 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
34466141 |
gagaatgaatacaatacctttggtccattgcgtggtgacttatcaaaatcatgataagcattaaacatagctcgagcatca---ataggataagtctggt |
34466045 |
T |
|
| Q |
714 |
aagaaatttagagtattagagagatatatgtaaaa |
748 |
Q |
| |
|
||||||||||||||| ||| | || ||||||||| |
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|
| T |
34466044 |
tagaaatttagagtatgagaaaaatttatgtaaaa |
34466010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 403 - 523
Target Start/End: Complemental strand, 34466404 - 34466284
Alignment:
| Q |
403 |
ctgacctatttctttctaatccaataaggaatccagcttcagccacaccagccaaaatggttccaaacttagcttgcttgtctcctattagagcatattc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||| |||||||||| |||||||||||||||| || |
|
|
| T |
34466404 |
ctgacctatttctttctaatccaataaggaatccagcttcagacacagctcccaaaagggttccatacttagcttgtagagctcctattagagcatactc |
34466305 |
T |
|
| Q |
503 |
actcacaaaagcctatatata |
523 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34466304 |
actcacaaaagcctatatata |
34466284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 18349793 - 18349758
Alignment:
| Q |
115 |
taacttcaaattaaaatcaattatagagtcaaaatc |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18349793 |
taacttcaaattaaaatcaattatggagtcaaaatc |
18349758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 45369201 - 45369086
Alignment:
| Q |
95 |
gaggcaaaagcttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctac-taaggatatccaaatatgtcaaaatcaattatata |
193 |
Q |
| |
|
|||||||||||| | |||| || |||||| |||||||||||| |||| |||||||| |||||| | || | ||||||| || |||||||||| | || | |
|
|
| T |
45369201 |
gaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaaatctaca |
45369102 |
T |
|
| Q |
194 |
cctttaaaatcaattt |
209 |
Q |
| |
|
||| | |||||||||| |
|
|
| T |
45369101 |
cctctgaaatcaattt |
45369086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 34466522 - 34466461
Alignment:
| Q |
260 |
taattcaaatttctaaagtcatttataaaattatttttc-tctaacccatcatcatagtttg |
320 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||| || ||||| |||||||| |||| |
|
|
| T |
34466522 |
taattcaaatttcttaactaatttataaaattatttttcatccaacccttcatcataatttg |
34466461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 11038149 - 11038106
Alignment:
| Q |
166 |
atccaaatatgtcaaaatcaattatatacctttaaaatcaattt |
209 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
11038149 |
atccaaacatgtcaaaatcaattatatacctctagaatcaattt |
11038106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 4403646 - 4403679
Alignment:
| Q |
101 |
aaagcttcaaattttaacttcaaattaaaatcaa |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
4403646 |
aaagctacaaattttaacttcaaattaaaatcaa |
4403679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 21007767 - 21007802
Alignment:
| Q |
174 |
atgtcaaaatcaattatatacctttaaaatcaattt |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21007767 |
atgtcaaaatcaattatatatctttaaaatcaattt |
21007802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 36374275 - 36374240
Alignment:
| Q |
174 |
atgtcaaaatcaattatatacctttaaaatcaattt |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36374275 |
atgtcaaaatcaattatacacctttaaaatcaattt |
36374240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 13224665 - 13224779
Alignment:
| Q |
95 |
gaggcaaaagcttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctactaaggatatccaaatatgtcaaaatcaattatatac |
194 |
Q |
| |
|
|||| ||||||| |||||| || |||||| || ||| ||||||||| |||||||| || |||| | | ||||||| |||||||||||||||||| | |
|
|
| T |
13224665 |
gaggtaaaagctccaaattctagcttcaagtttgaatgaattatagaaacaaaatcaattatactcggaacatccaaacatgtcaaaatcaattatacat |
13224764 |
T |
|
| Q |
195 |
ctttaaaatcaattt |
209 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
13224765 |
ctctagaatcaattt |
13224779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 29240500 - 29240613
Alignment:
| Q |
97 |
ggcaaaagcttcaaattttaacttcaaattaaaatcaattatagagtcaaaatcagttctac-taaggatatccaaatatgtcaaaatcaattatatacc |
195 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| |||||| | | ||| ||||||| |||||| | | |||||| || ||||||||||||||| || ||| |
|
|
| T |
29240500 |
ggcaaaaacttcaaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacacc |
29240599 |
T |
|
| Q |
196 |
tttaaaatcaattt |
209 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
29240600 |
tctagaatcaattt |
29240613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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