View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16590_low_10 (Length: 375)

Name: NF16590_low_10
Description: NF16590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16590_low_10
NF16590_low_10
[»] chr7 (15 HSPs)
chr7 (27-303)||(8051443-8051713)
chr7 (299-358)||(8051360-8051419)
chr7 (17-109)||(342983-343074)
chr7 (17-109)||(8245490-8245581)
chr7 (16-73)||(21701548-21701605)
chr7 (32-75)||(25496821-25496864)
chr7 (20-73)||(573419-573472)
chr7 (20-73)||(32145691-32145744)
chr7 (17-73)||(22478523-22478579)
chr7 (32-75)||(17620180-17620223)
chr7 (32-75)||(32145880-32145923)
chr7 (20-71)||(42164953-42165004)
chr7 (33-103)||(42164868-42164937)
chr7 (20-73)||(42206232-42206285)
chr7 (20-73)||(44657788-44657841)
[»] chr2 (21 HSPs)
chr2 (12-129)||(9923080-9923197)
chr2 (17-109)||(19440227-19440318)
chr2 (17-109)||(25447749-25447840)
chr2 (17-109)||(43290081-43290172)
chr2 (36-89)||(45277937-45277990)
chr2 (36-89)||(45285236-45285289)
chr2 (32-75)||(22433334-22433377)
chr2 (20-73)||(633489-633542)
chr2 (20-73)||(14895990-14896043)
chr2 (17-74)||(25452107-25452164)
chr2 (155-204)||(26553764-26553813)
chr2 (20-73)||(43774305-43774358)
chr2 (33-109)||(1523102-1523177)
chr2 (32-75)||(14190322-14190365)
chr2 (18-73)||(19086787-19086842)
chr2 (32-75)||(22427741-22427784)
chr2 (33-103)||(43774372-43774441)
chr2 (20-73)||(1523035-1523088)
chr2 (22-75)||(7387314-7387367)
chr2 (270-303)||(13492678-13492711)
chr2 (20-73)||(22427552-22427605)
[»] chr1 (16 HSPs)
chr1 (159-303)||(27314963-27315112)
chr1 (33-129)||(27314827-27314924)
chr1 (45-104)||(32806106-32806165)
chr1 (17-109)||(11657613-11657704)
chr1 (17-109)||(37361644-37361735)
chr1 (17-109)||(31095625-31095716)
chr1 (45-109)||(18537641-18537704)
chr1 (32-75)||(26708716-26708759)
chr1 (20-73)||(26708895-26708948)
chr1 (22-75)||(29532895-29532948)
chr1 (32-75)||(15714017-15714060)
chr1 (268-303)||(32806290-32806325)
chr1 (32-75)||(40276705-40276748)
chr1 (20-73)||(15713828-15713881)
chr1 (42-75)||(26026354-26026387)
chr1 (12-53)||(28198510-28198551)
[»] chr5 (12 HSPs)
chr5 (223-299)||(18787057-18787134)
chr5 (17-109)||(23056066-23056157)
chr5 (16-73)||(31106676-31106733)
chr5 (17-109)||(35267221-35267312)
chr5 (32-75)||(30960233-30960276)
chr5 (299-353)||(18786975-18787029)
chr5 (20-73)||(1534453-1534506)
chr5 (20-73)||(30960412-30960465)
chr5 (17-109)||(21173880-21173971)
chr5 (16-73)||(16630721-16630778)
chr5 (20-73)||(28373032-28373085)
chr5 (33-109)||(1534364-1534439)
[»] scaffold0014 (1 HSPs)
scaffold0014 (17-109)||(109251-109342)
[»] chr8 (5 HSPs)
chr8 (17-109)||(30716906-30716997)
chr8 (17-109)||(30724624-30724715)
chr8 (18-75)||(28349979-28350036)
chr8 (16-73)||(8507521-8507578)
chr8 (32-75)||(8507591-8507634)
[»] chr4 (8 HSPs)
chr4 (17-109)||(12661878-12661969)
chr4 (17-109)||(30676392-30676483)
chr4 (17-109)||(16331327-16331418)
chr4 (45-109)||(23191476-23191539)
chr4 (45-109)||(25693878-25693941)
chr4 (16-75)||(53527017-53527076)
chr4 (37-103)||(18901780-18901845)
chr4 (20-73)||(20195493-20195546)
[»] chr3 (11 HSPs)
chr3 (17-109)||(21880802-21880893)
chr3 (16-109)||(15755195-15755287)
chr3 (17-109)||(49489420-49489511)
chr3 (20-73)||(2171551-2171604)
chr3 (42-75)||(7871621-7871654)
chr3 (20-73)||(9727562-9727615)
chr3 (20-73)||(23341583-23341636)
chr3 (32-75)||(13983341-13983384)
chr3 (19-73)||(7871672-7871726)
chr3 (20-73)||(13983520-13983573)
chr3 (20-73)||(13988038-13988091)
[»] scaffold0020 (2 HSPs)
scaffold0020 (16-73)||(110367-110424)
scaffold0020 (34-75)||(110439-110480)
[»] chr6 (5 HSPs)
chr6 (20-75)||(17272612-17272667)
chr6 (18-73)||(25394410-25394465)
chr6 (32-75)||(14850042-14850085)
chr6 (32-75)||(19559222-19559265)
chr6 (20-73)||(14849853-14849906)
[»] scaffold0169 (2 HSPs)
scaffold0169 (20-73)||(15898-15951)
scaffold0169 (32-75)||(16087-16130)
[»] scaffold0004 (2 HSPs)
scaffold0004 (20-73)||(348470-348523)
scaffold0004 (33-103)||(348387-348456)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 27 - 303
Target Start/End: Complemental strand, 8051713 - 8051443
Alignment:
Q  27 atgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttgagtcatcataaatatat 126  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8051713 atgtaagtgcaattgaagcacatattattgtaaactagaagtttacaaaatcatattatgtttgttgttggcaagaccagttgagtcatcataaatatat 8051614  T
Q  127 tataatacggnnnnnnnnnnngttttggtgtggatatgtattgaagagctagaattttcttcaagtctaataatttttctgcattattaaagagacgaaa 226  Q
    ||||||||||            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  8051613 tataatacggtttttt------tttttgtgtggatatgtattgaagagctagaattttcttcaagtctaataatttttctgcattattgaagagacggaa 8051520  T
Q  227 gtttcttcaaatctaatagcttttgtgcattgctaattctcaaaaaagttgataatttgaggaaatgagtctcacat 303  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8051519 gtttcttcaaatctaataacttttgtgcattgctaattctcaaaaaagttgataatttgaggaaatgagtctcacat 8051443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 8051419 - 8051360
Alignment:
Q  299 cacatataatgatcatgtggaccaagaagttattttataactttaattgatgcattaact 358  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8051419 cacatataatgatcatgtggaccaagaagatattttataactttaattgatgcattaact 8051360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 343074 - 342983
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  343074 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 342983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 8245490 - 8245581
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  ||| |||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  8245490 tactacacttatattagtgcaacggaatcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 8245581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 21701605 - 21701548
Alignment:
Q  16 atactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||||||| | |||||||||||| |||||||||||||||| | ||||||||||    
T  21701605 atactacacttatattagtgcaattgaatcacatattattgtaaacctgaagtttaca 21701548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 25496821 - 25496864
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  25496821 agtgcaatggaagcacatattattgtaaaccagaagtttacaaa 25496864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 573472 - 573419
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  573472 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 573419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 32145691 - 32145744
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  32145691 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 32145744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 22478579 - 22478523
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    |||||||||||| | |||||||| |||||||||||||||||||| |  |||||||||    
T  22478579 tactacacttatattagtgcaatggaagcacatattattgtaaacctaaagtttaca 22478523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 17620180 - 17620223
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  17620180 agtgcaatggaagcacatattattgtaaaccataagtttacaaa 17620223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 32145880 - 32145923
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  32145880 agtgcaatggaagcacatattattgtaaaccataagtttacaaa 32145923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 42165004 - 42164953
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagttta 71  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||    
T  42165004 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagttta 42164953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 42164937 - 42164868
Alignment:
Q  33 gtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagac 103  Q
    ||||||| |||||||||| ||| ||||| ||||||||||| |||| ||||||  ||| |||||||||||||    
T  42164937 gtgcaatggaagcacataatatcgtaaaccagaagtttac-aaattatattaaatttattgttggcaagac 42164868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 42206232 - 42206285
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||| ||||| | ||||||||||    
T  42206232 tacacttatattagtgcaatggaagcacatattatagtaaacctgaagtttaca 42206285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 44657788 - 44657841
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| ||| |||||||||||||||| | ||||||||||    
T  44657788 tacacttatattagtgcaatggaaacacatattattgtaaacctgaagtttaca 44657841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 9923080 - 9923197
Alignment:
Q  12 gataatactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttgag 111  Q
    ||||||||||||||||| |  ||||||||||| |||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| | |  | |    
T  9923080 gataatactacacttatatttgtgcaattgaatcacaaattattgtaaatcagaagtttacaaaatcatattaaatttgttgttggcaagatcggcaggg 9923179  T
Q  112 tcatcataaatatattat 129  Q
    ||||| ||||||||||||    
T  9923180 tcatcttaaatatattat 9923197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 19440318 - 19440227
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  19440318 tactacacttatattagtgcaacagaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 19440227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 25447840 - 25447749
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  25447840 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 25447749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 43290172 - 43290081
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  43290172 tactacacttatattagtgcaacagaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 43290081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 45277937 - 45277990
Alignment:
Q  36 caattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgttt 89  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||| ||||    
T  45277937 caattgaaacacatgttattgtaattcagaagtttacaaaatcatattaagttt 45277990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 45285236 - 45285289
Alignment:
Q  36 caattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgttt 89  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||| ||||    
T  45285236 caattgaaacacatgttattgtaattcagaagtttacaaaatcatattaagttt 45285289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 22433334 - 22433377
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  22433334 agtgcaatggaagcacatattattgtaaaccagaagtttacaaa 22433377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 633489 - 633542
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  633489 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 633542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 14895990 - 14896043
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  14895990 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 14896043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 25452164 - 25452107
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaa 74  Q
    |||||||||||| | || ||||  |||||||||||||||||||| |||||||||||||    
T  25452164 tactacacttatattagcgcaacggaagcacatattattgtaaaccagaagtttacaa 25452107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 26553764 - 26553813
Alignment:
Q  155 tgtggatatgtattgaagagctagaattttcttcaagtctaataattttt 204  Q
    ||||||| |||||||||||| ||||| ||||||||| |||||||||||||    
T  26553764 tgtggatgtgtattgaagagttagaagtttcttcaaatctaataattttt 26553813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 43774305 - 43774358
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  43774305 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 43774358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 1523102 - 1523177
Alignment:
Q  33 gtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    ||||||| |||||||||| ||| ||||| ||||||||||| |||| ||||||  ||| ||||||||||||| |||||    
T  1523102 gtgcaatggaagcacataatatcgtaaaccagaagtttac-aaattatattaaatttattgttggcaagactagttg 1523177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 14190322 - 14190365
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||    
T  14190322 agtgcaatggaagcaaatattattgtaaaccagaagtttacaaa 14190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 19086787 - 19086842
Alignment:
Q  18 actacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||||| | |||||||| ||||||||||||||||| || ||| ||||||||    
T  19086787 actacacttatattagtgcaatagaagcacatattattgtcaaccagtagtttaca 19086842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 22427741 - 22427784
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  22427741 agtgcaatggaagcacatattattgtaaaccataagtttacaaa 22427784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 43774372 - 43774441
Alignment:
Q  33 gtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagac 103  Q
    ||||||| |||||||||| ||| ||||| ||||||||||| |||| ||||||  ||| |||||||||||||    
T  43774372 gtgcaatggaagcacataatatcgtaaaccagaagtttac-aaattatattaaatttattgttggcaagac 43774441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 1523035 - 1523088
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | | |||||| |||||||||||||||||||  ||||||||||||    
T  1523035 tacacttatattaatgcaatggaagcacatattattgtaagccagaagtttaca 1523088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 7387367 - 7387314
Alignment:
Q  22 cacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    ||||||| | |||||||| ||||||||||||||||||||  |||| ||||||||    
T  7387367 cacttatattagtgcaatggaagcacatattattgtaaactagaaatttacaaa 7387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 13492678 - 13492711
Alignment:
Q  270 aaaagttgataatttgaggaaatgagtctcacat 303  Q
    ||||||||||||| ||||||||||||||||||||    
T  13492678 aaaagttgataatatgaggaaatgagtctcacat 13492711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 22427552 - 22427605
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||| ||||||||||||||| | ||||||||||    
T  22427552 tacacttatattagtgcaatggaagtacatattattgtaaacctgaagtttaca 22427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 27314963 - 27315112
Alignment:
Q  159 gatatgtattgaagagctagaattttcttcaagtctaataatttttctgcattattaaagagacgaaagtttcttcaaatc----taatagcttttgtgc 254  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||| || ||||||  |||| | ||  ||||||||||||    ||||| |||||||||    
T  27314963 gatatgtattgaagatccagaagattcttcaagtctaataacttttgtgtattattgtagagtccaagatttcttcaaatctaattaataacttttgtgc 27315062  T
Q  255 attgctaattctcaaa-aaagttgataatttgaggaaatgagtctcacat 303  Q
    ||| |||||||||||| ||||||||||||||||| |||||| ||||||||    
T  27315063 attactaattctcaaagaaagttgataatttgagaaaatgactctcacat 27315112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 27314827 - 27314924
Alignment:
Q  33 gtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgt-tgttggcaagaccagttgagtcatcataaatatattat 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||  ||||||||||  ||||  |||||| | ||||||||||    
T  27314827 gtgcaattgaagcacatattattgtaaaccagaagtttacaaaatcatattaagtgtgtacgttggcaagattagttaggtcatcttgaatatattat 27314924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 32806106 - 32806165
Alignment:
Q  45 cacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagacc 104  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  32806106 cacatattattgtaaatcaggagtttacaaaatcatattaagtttgttgttggctagacc 32806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 11657613 - 11657704
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  11657613 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 11657704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 37361735 - 37361644
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  37361735 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 37361644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 31095716 - 31095625
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| | || |||||| |||||| |||||||| ||| ||||    
T  31095716 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-atattatattaagtttgtagttggcaataccggttg 31095625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 18537704 - 18537641
Alignment:
Q  45 cacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||||||| ||||||||||| | || |||||| ||||||||||||||||||| ||||    
T  18537704 cacatattattgtaaaccagaagtttac-atattatattaagtttgttgttggcaagaccggttg 18537641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 26708759 - 26708716
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  26708759 agtgcaatggaagcacatattattgtaaaccagaagtttacaaa 26708716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 26708948 - 26708895
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  26708948 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 26708895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 29532895 - 29532948
Alignment:
Q  22 cacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    ||||||| | |||||||| ||| |||||||||||||||| ||||||||||||||    
T  29532895 cacttatattagtgcaatggaaacacatattattgtaaaccagaagtttacaaa 29532948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 15714017 - 15714060
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  15714017 agtgcaatggaagcacatattattgtaaaccataagtttacaaa 15714060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 32806290 - 32806325
Alignment:
Q  268 aaaaaagttgataatttgaggaaatgagtctcacat 303  Q
    |||||||||||||||||||||||||| |||||||||    
T  32806290 aaaaaagttgataatttgaggaaatgggtctcacat 32806325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 40276748 - 40276705
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||    
T  40276748 agtgcaatagaagcacatattattataaaccagaagtttacaaa 40276705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 15713828 - 15713881
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||| ||||||||||||||| | ||||||||||    
T  15713828 tacacttatattagtgcaatggaagtacatattattgtaaacctgaagtttaca 15713881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 26026354 - 26026387
Alignment:
Q  42 aagcacatattattgtaaatcagaagtttacaaa 75  Q
    ||||||||||||||||||| ||||||||||||||    
T  26026354 aagcacatattattgtaaaccagaagtttacaaa 26026387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 28198551 - 28198510
Alignment:
Q  12 gataatactacacttatgtaagtgcaattgaagcacatatta 53  Q
    ||||||||||||||||| |  |||||||||||||||||||||    
T  28198551 gataatactacacttatatttgtgcaattgaagcacatatta 28198510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 18787134 - 18787057
Alignment:
Q  223 gaaagtttcttcaaatctaatagcttttgtgcattgctaattctcaaa-aaagttgataatttgaggaaatgagtctc 299  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  |||| |||||||||||||||||||||||||||||    
T  18787134 gaaagtttcttcaaatctaataacttttttgaattactaatttccaaagaaagttgataatttgaggaaatgagtctc 18787057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 23056157 - 23056066
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| |||||||||||||| | |||||| |||||| |||||||| ||| ||||    
T  23056157 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttacaaact-atattaagtttgtagttggcaataccggttg 23056066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 31106733 - 31106676
Alignment:
Q  16 atactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  31106733 atactgcacttatattagtgcaatggaagcacatattattgtaaatcagaagtttaca 31106676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 35267312 - 35267221
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  ||| |||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  35267312 tactacacttatattagtgcaacggaatcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 35267221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 30960276 - 30960233
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  30960276 agtgcaatggaagcacatattattgtaaaccagaagtttacaaa 30960233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 18787029 - 18786975
Alignment:
Q  299 cacatataatgatcatgtggaccaagaagttattttataactttaattgatgcat 353  Q
    |||| |||||||| |||||||||||| || ||||||||||||| |||||||||||    
T  18787029 cacacataatgataatgtggaccaagtagatattttataacttcaattgatgcat 18786975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 1534506 - 1534453
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  1534506 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 1534453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 30960465 - 30960412
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  30960465 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 30960412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 21173971 - 21173880
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | | |||||  |||||||||||||||||||| || |||||||| |||| |||||| |||| | |||||||| ||| ||||    
T  21173971 tactacacttatattaatgcaacggaagcacatattattgtaaaccaaaagtttac-aaattatattaagtttttagttggcaataccggttg 21173880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 16630778 - 16630721
Alignment:
Q  16 atactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||||||  | |||||||| ||||||||| |||||||||| | ||||||||||    
T  16630778 atactacacttaaattagtgcaatggaagcacattttattgtaaacctgaagtttaca 16630721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 28373085 - 28373032
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||| ||| |||||||||||||||||||| | ||||||||||    
T  28373085 tacacttatattagtgtaatggaagcacatattattgtaaacctgaagtttaca 28373032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 1534439 - 1534364
Alignment:
Q  33 gtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    ||||||| ||||||| || ||| |||||||||||| |||| |||| ||||||  ||| ||||||||||||| |||||    
T  1534439 gtgcaatggaagcacgtaatatcgtaaatcagaagcttac-aaattatattaaatttattgttggcaagactagttg 1534364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 109251 - 109342
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  109251 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 109342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 30716997 - 30716906
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  30716997 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 30716906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 30724715 - 30724624
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  30724715 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 30724624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28350036 - 28349979
Alignment:
Q  18 actacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    ||||||||| | | |||||||| |||||||||||||||||||||||||||||||||||    
T  28350036 actacacttgtattagtgcaatggaagcacatattattgtaaatcagaagtttacaaa 28349979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 8507521 - 8507578
Alignment:
Q  16 atactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||||||| | |||| ||| |||||||||||||||||||| | ||||||||||    
T  8507521 atactacacttatattagtgaaatggaagcacatattattgtaaacctgaagtttaca 8507578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 8507591 - 8507634
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||    
T  8507591 agtgcaatggaagcacatattattttaaaccagaagtttacaaa 8507634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 12661969 - 12661878
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  12661969 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 12661878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 30676483 - 30676392
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  30676483 tactacacttatattagtgcaacagaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 30676392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 16331418 - 16331327
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||  |||| |||||| |||||| |||||||| ||| ||||    
T  16331418 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagttta-gaaattatattaagtttgtagttggcaataccggttg 16331327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 23191476 - 23191539
Alignment:
Q  45 cacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||||||| ||||||||||| | || |||||| ||||||||||||||||||| ||||    
T  23191476 cacatattattgtaaaccagaagtttac-atattatattaagtttgttgttggcaagaccggttg 23191539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 25693941 - 25693878
Alignment:
Q  45 cacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||||||| ||||||||||| | || |||||| ||||||||||||||||||| ||||    
T  25693941 cacatattattgtaaaccagaagtttac-atattatattaagtttgttgttggcaagaccggttg 25693878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 53527017 - 53527076
Alignment:
Q  16 atactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||| | |||||||| ||||||||| |||||||||| ||||||||||||||    
T  53527017 atactacatttatattagtgcaatggaagcacatgttattgtaaaccagaagtttacaaa 53527076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 18901845 - 18901780
Alignment:
Q  37 aattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagac 103  Q
    |||| |||||||||||||||||||   ||||||||| ||||||||||| |||||| |||||||||||    
T  18901845 aatttaagcacatattattgtaaacttgaagtttac-aaatcatattaagtttgtcgttggcaagac 18901780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 20195546 - 20195493
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  20195546 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 20195493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 21880802 - 21880893
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  21880802 tactacacttatattagtgcaacggaagcacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 21880893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 15755287 - 15755195
Alignment:
Q  16 atactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    ||||||||||||| | |||||||  |||||||||||||||||||| |||||| |||| |||| |||||| |||||| |||||||| ||| ||||    
T  15755287 atactacacttatattagtgcaacggaagcacatattattgtaaaccagaagcttac-aaattatattaagtttgtagttggcaataccggttg 15755195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 49489511 - 49489420
Alignment:
Q  17 tactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagaccagttg 109  Q
    |||||||||||| | |||||||  ||| |||||||||||||||| ||||||||||| |||| |||||| |||||| |||||||| ||| ||||    
T  49489511 tactacacttatattagtgcaacggaaacacatattattgtaaaccagaagtttac-aaattatattaagtttgtagttggcaataccggttg 49489420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 2171604 - 2171551
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  2171604 tacacttatattagtgcaatagaagcacatattattgtaaacctgaagtttaca 2171551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 7871654 - 7871621
Alignment:
Q  42 aagcacatattattgtaaatcagaagtttacaaa 75  Q
    ||||||||||||||||||||||||||||||||||    
T  7871654 aagcacatattattgtaaatcagaagtttacaaa 7871621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 9727615 - 9727562
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  9727615 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 9727562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 23341583 - 23341636
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  23341583 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 23341636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 13983384 - 13983341
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  13983384 agtgcaatggaagcacatattattgtaaaccaaaagtttacaaa 13983341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 7871726 - 7871672
Alignment:
Q  19 ctacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    |||||||||| | |||||||| |||  ||||||||||||||||| ||||||||||    
T  7871726 ctacacttatattagtgcaatggaataacatattattgtaaatctgaagtttaca 7871672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 13983573 - 13983520
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| ||||||||||||||||||||   ||||||||||    
T  13983573 tacacttatattagtgcaatggaagcacatattattgtaaacttgaagtttaca 13983520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 13988038 - 13988091
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | ||||||||  ||||||||||||||||||| | ||||||||||    
T  13988038 tacacttatattagtgcaatataagcacatattattgtaaacctgaagtttaca 13988091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 110367 - 110424
Alignment:
Q  16 atactacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||||||| || |||||||||||||||||||||||||||||  ||||||||||    
T  110367 atactacacttatatatgtgcaattgaagcacatattattgtaaatatgaagtttaca 110424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 110439 - 110480
Alignment:
Q  34 tgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||| ||||||| |||||||||||| ||||||||||||||    
T  110439 tgcaatggaagcacgtattattgtaaaccagaagtttacaaa 110480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 17272667 - 17272612
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    ||||||||| | ||||| || |||||||||||||||||||| ||||||||||||||    
T  17272667 tacacttatattagtgcgatggaagcacatattattgtaaaccagaagtttacaaa 17272612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 25394410 - 25394465
Alignment:
Q  18 actacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  25394410 actacacttatattagtgcaatggaagcacatattattgtaaaccggaagtttaca 25394465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 14850042 - 14850085
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  14850042 agtgcaatggaagcacatattattgtaaaccataagtttacaaa 14850085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 19559265 - 19559222
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  19559265 agtgcaattgaagcacttattattgtcaaccagaagtttacaaa 19559222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 14849853 - 14849906
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||| ||||||||||||||| | ||||||||||    
T  14849853 tacacttatattagtgcaatggaagtacatattattgtaaacctgaagtttaca 14849906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 15898 - 15951
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  15898 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 15951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 16087 - 16130
Alignment:
Q  32 agtgcaattgaagcacatattattgtaaatcagaagtttacaaa 75  Q
    |||||||| || ||||||||||||||||| ||||||||||||||    
T  16087 agtgcaatggaggcacatattattgtaaaccagaagtttacaaa 16130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 348523 - 348470
Alignment:
Q  20 tacacttatgtaagtgcaattgaagcacatattattgtaaatcagaagtttaca 73  Q
    ||||||||| | |||||||| |||||||||||||||||||| | ||||||||||    
T  348523 tacacttatattagtgcaatggaagcacatattattgtaaacctgaagtttaca 348470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 348456 - 348387
Alignment:
Q  33 gtgcaattgaagcacatattattgtaaatcagaagtttacaaaatcatattatgtttgttgttggcaagac 103  Q
    ||||||| |||||||||| ||| ||||| ||||||||||| |||| ||||||  ||| |||||||||||||    
T  348456 gtgcaatggaagcacataatatcgtaaaccagaagtttac-aaattatattaaatttattgttggcaagac 348387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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